Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1206

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1205 and GFF1206 are separated by 35 nucleotidesGFF1206 and GFF1207 are separated by 60 nucleotides GFF1205 - Benzaldehyde dehydrogenase, at 67,062 to 68,639 GFF1205 GFF1206 - Benzoate-CoA ligase (EC 6.2.1.25), at 68,675 to 70,246 GFF1206 GFF1207 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 70,307 to 71,398 GFF1207 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 67.834 kb on + strand, within GFF1205at 68.298 kb on + strand, within GFF1205at 68.299 kb on - strand, within GFF1205at 68.320 kb on - strand, within GFF1205at 68.365 kb on - strand, within GFF1205at 68.559 kb on + strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.634 kb on + strandat 68.634 kb on + strandat 68.634 kb on + strandat 68.634 kb on + strandat 68.634 kb on + strandat 68.792 kb on + strandat 68.976 kb on - strand, within GFF1206at 68.976 kb on - strand, within GFF1206at 68.981 kb on + strand, within GFF1206at 68.981 kb on + strand, within GFF1206at 68.981 kb on + strand, within GFF1206at 68.982 kb on - strand, within GFF1206at 68.982 kb on - strand, within GFF1206at 68.982 kb on - strand, within GFF1206at 68.982 kb on - strand, within GFF1206at 68.982 kb on - strand, within GFF1206at 68.982 kb on - strand, within GFF1206at 68.982 kb on - strand, within GFF1206at 69.221 kb on + strand, within GFF1206at 69.221 kb on + strand, within GFF1206at 69.222 kb on - strand, within GFF1206at 69.272 kb on - strand, within GFF1206at 69.278 kb on + strand, within GFF1206at 69.278 kb on - strand, within GFF1206at 69.279 kb on - strand, within GFF1206at 69.296 kb on + strand, within GFF1206at 69.296 kb on + strand, within GFF1206at 69.297 kb on - strand, within GFF1206at 69.488 kb on + strand, within GFF1206at 69.489 kb on - strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.797 kb on + strand, within GFF1206at 69.827 kb on + strand, within GFF1206at 69.827 kb on + strand, within GFF1206at 69.828 kb on - strand, within GFF1206at 69.893 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.965 kb on + strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 69.966 kb on - strand, within GFF1206at 70.148 kb on + strandat 70.148 kb on + strandat 70.148 kb on + strandat 70.149 kb on - strandat 70.149 kb on - strandat 70.149 kb on - strandat 70.150 kb on + strandat 70.155 kb on - strandat 70.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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67,834 + GFF1205 0.49 -1.1
68,298 + GFF1205 0.78 +0.9
68,299 - GFF1205 0.78 -0.3
68,320 - GFF1205 0.80 -0.1
68,365 - GFF1205 0.83 -0.3
68,559 + -1.5
68,560 - +0.3
68,560 - +0.6
68,560 - -0.0
68,634 + -0.1
68,634 + +0.3
68,634 + -0.2
68,634 + +0.0
68,634 + -0.2
68,792 + +0.6
68,976 - GFF1206 0.19 +0.2
68,976 - GFF1206 0.19 -0.0
68,981 + GFF1206 0.19 -0.0
68,981 + GFF1206 0.19 -1.1
68,981 + GFF1206 0.19 -0.1
68,982 - GFF1206 0.20 +0.6
68,982 - GFF1206 0.20 +0.9
68,982 - GFF1206 0.20 -0.4
68,982 - GFF1206 0.20 -0.8
68,982 - GFF1206 0.20 +0.1
68,982 - GFF1206 0.20 +0.1
68,982 - GFF1206 0.20 +0.5
69,221 + GFF1206 0.35 -0.1
69,221 + GFF1206 0.35 +0.4
69,222 - GFF1206 0.35 +0.3
69,272 - GFF1206 0.38 +0.7
69,278 + GFF1206 0.38 +2.0
69,278 - GFF1206 0.38 -0.2
69,279 - GFF1206 0.38 +0.6
69,296 + GFF1206 0.40 +0.3
69,296 + GFF1206 0.40 +0.6
69,297 - GFF1206 0.40 +0.1
69,488 + GFF1206 0.52 +0.8
69,489 - GFF1206 0.52 +1.5
69,797 + GFF1206 0.71 -1.2
69,797 + GFF1206 0.71 +0.4
69,797 + GFF1206 0.71 +0.0
69,797 + GFF1206 0.71 +0.1
69,797 + GFF1206 0.71 +0.1
69,797 + GFF1206 0.71 -0.3
69,797 + GFF1206 0.71 -0.0
69,797 + GFF1206 0.71 -0.6
69,797 + GFF1206 0.71 -0.3
69,827 + GFF1206 0.73 +2.4
69,827 + GFF1206 0.73 +0.6
69,828 - GFF1206 0.73 +1.7
69,893 + GFF1206 0.77 -0.1
69,965 + GFF1206 0.82 +0.7
69,965 + GFF1206 0.82 +0.2
69,965 + GFF1206 0.82 -0.7
69,965 + GFF1206 0.82 +0.4
69,965 + GFF1206 0.82 -0.1
69,965 + GFF1206 0.82 -1.1
69,965 + GFF1206 0.82 -0.9
69,965 + GFF1206 0.82 +0.5
69,965 + GFF1206 0.82 -1.0
69,965 + GFF1206 0.82 -0.9
69,966 - GFF1206 0.82 +0.0
69,966 - GFF1206 0.82 +1.4
69,966 - GFF1206 0.82 -0.3
69,966 - GFF1206 0.82 +0.4
69,966 - GFF1206 0.82 -1.9
69,966 - GFF1206 0.82 +0.5
69,966 - GFF1206 0.82 -0.5
69,966 - GFF1206 0.82 -0.3
69,966 - GFF1206 0.82 +0.9
70,148 + +0.3
70,148 + +2.2
70,148 + -0.0
70,149 - +1.6
70,149 - -0.0
70,149 - +1.2
70,150 + +1.0
70,155 - -0.1
70,155 - -0.8

Or see this region's nucleotide sequence