Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1196 and GFF1197 are separated by 99 nucleotides GFF1197 and GFF1198 are separated by 1 nucleotides GFF1198 and GFF1199 overlap by 41 nucleotides GFF1199 and GFF1200 are separated by 2 nucleotides
GFF1196 - Signal transduction histidine kinase, at 54,929 to 57,040
GFF1196
GFF1197 - Putative formate dehydrogenase-specific chaperone, at 57,140 to 57,760
GFF1197
GFF1198 - Iron-sulfur cluster-binding protein, at 57,762 to 59,831
GFF1198
GFF1199 - hypothetical protein, at 59,791 to 60,390
GFF1199
GFF1200 - FIG00431662: hypothetical protein, at 60,393 to 61,025
GFF1200
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 57.086 kb on + strand at 57.087 kb on - strand at 57.087 kb on - strand at 57.087 kb on - strand at 57.087 kb on - strand at 57.151 kb on + strand at 57.151 kb on + strand at 57.152 kb on - strand at 57.211 kb on - strand, within GFF1197 at 57.339 kb on + strand, within GFF1197 at 57.340 kb on - strand, within GFF1197 at 57.340 kb on - strand, within GFF1197 at 57.361 kb on - strand, within GFF1197 at 57.361 kb on - strand, within GFF1197 at 57.361 kb on - strand, within GFF1197 at 57.471 kb on + strand, within GFF1197 at 57.471 kb on + strand, within GFF1197 at 57.471 kb on + strand, within GFF1197 at 57.472 kb on - strand, within GFF1197 at 57.528 kb on + strand, within GFF1197 at 57.673 kb on - strand, within GFF1197 at 57.673 kb on - strand, within GFF1197 at 57.673 kb on - strand, within GFF1197 at 57.675 kb on + strand, within GFF1197 at 57.675 kb on + strand, within GFF1197 at 57.676 kb on - strand, within GFF1197 at 57.696 kb on + strand, within GFF1197 at 57.696 kb on + strand, within GFF1197 at 57.696 kb on + strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.697 kb on - strand, within GFF1197 at 57.799 kb on + strand at 57.800 kb on - strand at 57.800 kb on - strand at 57.943 kb on + strand at 57.943 kb on - strand at 58.709 kb on - strand, within GFF1198 at 58.759 kb on + strand, within GFF1198 at 58.765 kb on + strand, within GFF1198 at 58.765 kb on + strand, within GFF1198 at 58.765 kb on + strand, within GFF1198 at 58.765 kb on + strand, within GFF1198 at 58.766 kb on - strand, within GFF1198 at 58.945 kb on + strand, within GFF1198 at 58.945 kb on + strand, within GFF1198 at 58.946 kb on - strand, within GFF1198 at 58.946 kb on - strand, within GFF1198 at 59.048 kb on - strand, within GFF1198 at 59.218 kb on + strand, within GFF1198 at 59.218 kb on + strand, within GFF1198 at 59.219 kb on - strand, within GFF1198 at 59.500 kb on + strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.565 kb on - strand, within GFF1198 at 60.056 kb on + strand, within GFF1199 at 60.056 kb on + strand, within GFF1199 at 60.057 kb on - strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.095 kb on + strand, within GFF1199 at 60.096 kb on - strand, within GFF1199 at 60.173 kb on + strand, within GFF1199 at 60.173 kb on + strand, within GFF1199 at 60.174 kb on - strand, within GFF1199 at 60.514 kb on + strand, within GFF1200 at 60.514 kb on + strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.730 kb on + strand, within GFF1200 at 60.730 kb on + strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 60.731 kb on - strand, within GFF1200
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 57,086 + -0.8 57,087 - -0.9 57,087 - +1.0 57,087 - +0.3 57,087 - +1.4 57,151 + -0.5 57,151 + +1.3 57,152 - -1.2 57,211 - GFF1197 0.11 -1.6 57,339 + GFF1197 0.32 -0.1 57,340 - GFF1197 0.32 +0.3 57,340 - GFF1197 0.32 -1.5 57,361 - GFF1197 0.36 +0.2 57,361 - GFF1197 0.36 -1.1 57,361 - GFF1197 0.36 -0.7 57,471 + GFF1197 0.53 -0.2 57,471 + GFF1197 0.53 -0.1 57,471 + GFF1197 0.53 -1.2 57,472 - GFF1197 0.53 +0.7 57,528 + GFF1197 0.62 -0.2 57,673 - GFF1197 0.86 -1.5 57,673 - GFF1197 0.86 -0.6 57,673 - GFF1197 0.86 +0.7 57,675 + GFF1197 0.86 -0.4 57,675 + GFF1197 0.86 -0.2 57,676 - GFF1197 0.86 -0.1 57,696 + GFF1197 0.90 -0.3 57,696 + GFF1197 0.90 -0.4 57,696 + GFF1197 0.90 +0.3 57,697 - GFF1197 0.90 -0.4 57,697 - GFF1197 0.90 -0.5 57,697 - GFF1197 0.90 -0.5 57,697 - GFF1197 0.90 -0.7 57,799 + +0.4 57,800 - -0.0 57,800 - +0.4 57,943 + -0.6 57,943 - -0.9 58,709 - GFF1198 0.46 -1.0 58,759 + GFF1198 0.48 -1.5 58,765 + GFF1198 0.48 -1.4 58,765 + GFF1198 0.48 -0.5 58,765 + GFF1198 0.48 -0.1 58,765 + GFF1198 0.48 -0.9 58,766 - GFF1198 0.49 -0.5 58,945 + GFF1198 0.57 -0.9 58,945 + GFF1198 0.57 -0.9 58,946 - GFF1198 0.57 -0.4 58,946 - GFF1198 0.57 -0.8 59,048 - GFF1198 0.62 -0.6 59,218 + GFF1198 0.70 -1.5 59,218 + GFF1198 0.70 -0.1 59,219 - GFF1198 0.70 +1.2 59,500 + GFF1198 0.84 -0.6 59,501 - GFF1198 0.84 +1.3 59,501 - GFF1198 0.84 -1.1 59,501 - GFF1198 0.84 +0.9 59,501 - GFF1198 0.84 -0.7 59,565 - GFF1198 0.87 +0.0 60,056 + GFF1199 0.44 -0.4 60,056 + GFF1199 0.44 +0.5 60,057 - GFF1199 0.44 +0.1 60,068 + GFF1199 0.46 -2.1 60,068 + GFF1199 0.46 +0.3 60,068 + GFF1199 0.46 -0.1 60,068 + GFF1199 0.46 -0.2 60,068 + GFF1199 0.46 -0.3 60,069 - GFF1199 0.46 -0.6 60,069 - GFF1199 0.46 -0.2 60,069 - GFF1199 0.46 +0.5 60,069 - GFF1199 0.46 -0.9 60,095 + GFF1199 0.51 -0.0 60,096 - GFF1199 0.51 -0.6 60,173 + GFF1199 0.64 -1.0 60,173 + GFF1199 0.64 -0.1 60,174 - GFF1199 0.64 -0.8 60,514 + GFF1200 0.19 -0.6 60,514 + GFF1200 0.19 +0.1 60,617 - GFF1200 0.35 -0.4 60,617 - GFF1200 0.35 -1.1 60,617 - GFF1200 0.35 +1.2 60,730 + GFF1200 0.53 -0.9 60,730 + GFF1200 0.53 -0.4 60,731 - GFF1200 0.53 -0.7 60,731 - GFF1200 0.53 -0.9 60,731 - GFF1200 0.53 -0.6
Or see this region's nucleotide sequence