Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1175 and GFF1176 are separated by 42 nucleotides GFF1176 and GFF1177 are separated by 3 nucleotides GFF1177 and GFF1178 are separated by 10 nucleotides
GFF1175 - ortholog of Bordetella pertussis (BX470248) BP2475, at 33,222 to 33,866
GFF1175
GFF1176 - hypothetical protein, at 33,909 to 34,301
GFF1176
GFF1177 - Hemoglobin-like protein HbO, at 34,305 to 34,721
GFF1177
GFF1178 - ABC transporter, permease protein, putative, at 34,732 to 37,275
GFF1178
Position (kb) 34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.540 kb on + strand, within GFF1175 at 33.877 kb on + strand at 33.878 kb on - strand at 33.878 kb on - strand at 33.878 kb on - strand at 33.908 kb on + strand at 33.908 kb on + strand at 33.908 kb on + strand at 33.908 kb on + strand at 33.909 kb on - strand at 33.909 kb on - strand at 33.975 kb on + strand, within GFF1176 at 33.976 kb on - strand, within GFF1176 at 34.032 kb on + strand, within GFF1176 at 34.032 kb on + strand, within GFF1176 at 34.033 kb on - strand, within GFF1176 at 34.033 kb on - strand, within GFF1176 at 34.174 kb on - strand, within GFF1176 at 34.174 kb on - strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.260 kb on + strand, within GFF1176 at 34.261 kb on - strand, within GFF1176 at 34.498 kb on + strand, within GFF1177 at 34.499 kb on - strand, within GFF1177 at 34.621 kb on + strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 34.622 kb on - strand, within GFF1177 at 35.252 kb on + strand, within GFF1178 at 35.252 kb on + strand, within GFF1178 at 35.253 kb on - strand, within GFF1178 at 35.253 kb on - strand, within GFF1178 at 35.253 kb on - strand, within GFF1178 at 35.618 kb on + strand, within GFF1178 at 35.618 kb on + strand, within GFF1178
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 33,540 + GFF1175 0.49 -0.4 33,877 + +0.4 33,878 - -0.3 33,878 - +0.1 33,878 - -0.3 33,908 + -0.3 33,908 + -0.4 33,908 + +0.1 33,908 + -0.4 33,909 - +1.4 33,909 - +0.8 33,975 + GFF1176 0.17 -1.3 33,976 - GFF1176 0.17 +2.3 34,032 + GFF1176 0.31 +0.4 34,032 + GFF1176 0.31 +0.7 34,033 - GFF1176 0.32 +0.0 34,033 - GFF1176 0.32 -1.3 34,174 - GFF1176 0.67 -0.3 34,174 - GFF1176 0.67 +0.7 34,260 + GFF1176 0.89 -0.4 34,260 + GFF1176 0.89 -0.2 34,260 + GFF1176 0.89 +0.1 34,260 + GFF1176 0.89 -0.5 34,260 + GFF1176 0.89 -0.1 34,261 - GFF1176 0.90 +0.1 34,498 + GFF1177 0.46 -1.5 34,499 - GFF1177 0.47 -0.4 34,621 + GFF1177 0.76 +1.0 34,622 - GFF1177 0.76 +0.2 34,622 - GFF1177 0.76 +0.3 34,622 - GFF1177 0.76 +0.6 34,622 - GFF1177 0.76 -2.0 34,622 - GFF1177 0.76 +0.1 34,622 - GFF1177 0.76 -0.4 35,252 + GFF1178 0.20 -0.8 35,252 + GFF1178 0.20 -0.0 35,253 - GFF1178 0.20 -0.0 35,253 - GFF1178 0.20 +0.3 35,253 - GFF1178 0.20 -0.4 35,618 + GFF1178 0.35 -0.2 35,618 + GFF1178 0.35 +0.0
Or see this region's nucleotide sequence