Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS18195 and COO64_RS18200 overlap by 4 nucleotides COO64_RS18200 and COO64_RS18205 overlap by 4 nucleotides COO64_RS18205 and COO64_RS18210 are separated by 178 nucleotides
COO64_RS18195: COO64_RS18195 - iron ABC transporter permease, at 170,214 to 171,236
_RS18195
COO64_RS18200: COO64_RS18200 - ABC transporter substrate-binding protein, at 171,233 to 172,183
_RS18200
COO64_RS18205: COO64_RS18205 - ABC transporter ATP-binding protein, at 172,180 to 172,968
_RS18205
COO64_RS18210: COO64_RS18210 - TonB-dependent copper receptor, at 173,147 to 175,213
_RS18210
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.877 kb on - strand, within COO64_RS18195 at 170.877 kb on - strand, within COO64_RS18195 at 170.892 kb on + strand, within COO64_RS18195 at 170.893 kb on - strand, within COO64_RS18195 at 171.047 kb on + strand, within COO64_RS18195 at 171.048 kb on - strand, within COO64_RS18195 at 171.048 kb on - strand, within COO64_RS18195 at 171.306 kb on + strand at 171.306 kb on + strand at 171.306 kb on + strand at 171.307 kb on - strand at 171.307 kb on - strand at 171.307 kb on - strand at 171.307 kb on - strand at 171.711 kb on + strand, within COO64_RS18200 at 171.711 kb on + strand, within COO64_RS18200 at 171.711 kb on + strand, within COO64_RS18200 at 171.711 kb on + strand, within COO64_RS18200 at 171.711 kb on + strand, within COO64_RS18200 at 171.711 kb on + strand, within COO64_RS18200 at 171.711 kb on + strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.712 kb on - strand, within COO64_RS18200 at 171.774 kb on + strand, within COO64_RS18200 at 171.775 kb on - strand, within COO64_RS18200 at 171.775 kb on - strand, within COO64_RS18200 at 171.837 kb on + strand, within COO64_RS18200 at 171.897 kb on + strand, within COO64_RS18200 at 171.897 kb on + strand, within COO64_RS18200 at 171.897 kb on + strand, within COO64_RS18200 at 171.898 kb on - strand, within COO64_RS18200 at 172.200 kb on + strand at 172.331 kb on + strand, within COO64_RS18205 at 172.331 kb on + strand, within COO64_RS18205 at 172.331 kb on + strand, within COO64_RS18205 at 172.331 kb on + strand, within COO64_RS18205 at 172.331 kb on + strand, within COO64_RS18205 at 172.331 kb on + strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.332 kb on - strand, within COO64_RS18205 at 172.940 kb on + strand at 172.940 kb on + strand at 172.941 kb on - strand at 173.001 kb on + strand at 173.001 kb on + strand at 173.001 kb on + strand at 173.001 kb on + strand at 173.001 kb on + strand at 173.001 kb on + strand at 173.001 kb on + strand at 173.001 kb on + strand at 173.002 kb on - strand at 173.021 kb on - strand at 173.179 kb on + strand at 173.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X remove 170,877 - COO64_RS18195 0.65 -0.5 170,877 - COO64_RS18195 0.65 +0.0 170,892 + COO64_RS18195 0.66 -0.9 170,893 - COO64_RS18195 0.66 +0.5 171,047 + COO64_RS18195 0.81 -0.5 171,048 - COO64_RS18195 0.82 -0.1 171,048 - COO64_RS18195 0.82 +1.0 171,306 + -0.1 171,306 + +0.5 171,306 + +1.2 171,307 - -0.6 171,307 - -0.5 171,307 - -0.6 171,307 - -0.0 171,711 + COO64_RS18200 0.50 -0.2 171,711 + COO64_RS18200 0.50 +0.4 171,711 + COO64_RS18200 0.50 -2.5 171,711 + COO64_RS18200 0.50 +0.2 171,711 + COO64_RS18200 0.50 -0.3 171,711 + COO64_RS18200 0.50 -0.1 171,711 + COO64_RS18200 0.50 -1.5 171,712 - COO64_RS18200 0.50 +0.9 171,712 - COO64_RS18200 0.50 +0.1 171,712 - COO64_RS18200 0.50 -0.1 171,712 - COO64_RS18200 0.50 -0.6 171,712 - COO64_RS18200 0.50 +0.5 171,712 - COO64_RS18200 0.50 -2.3 171,712 - COO64_RS18200 0.50 -1.1 171,712 - COO64_RS18200 0.50 +0.1 171,712 - COO64_RS18200 0.50 +0.7 171,712 - COO64_RS18200 0.50 +0.5 171,712 - COO64_RS18200 0.50 +0.2 171,712 - COO64_RS18200 0.50 +0.2 171,774 + COO64_RS18200 0.57 +0.8 171,775 - COO64_RS18200 0.57 -0.5 171,775 - COO64_RS18200 0.57 -0.1 171,837 + COO64_RS18200 0.64 -0.2 171,897 + COO64_RS18200 0.70 -0.1 171,897 + COO64_RS18200 0.70 +0.3 171,897 + COO64_RS18200 0.70 +0.1 171,898 - COO64_RS18200 0.70 +0.1 172,200 + +1.5 172,331 + COO64_RS18205 0.19 -1.8 172,331 + COO64_RS18205 0.19 -0.7 172,331 + COO64_RS18205 0.19 +1.0 172,331 + COO64_RS18205 0.19 +1.2 172,331 + COO64_RS18205 0.19 +0.0 172,331 + COO64_RS18205 0.19 -0.1 172,332 - COO64_RS18205 0.19 +0.1 172,332 - COO64_RS18205 0.19 -0.3 172,332 - COO64_RS18205 0.19 +0.3 172,332 - COO64_RS18205 0.19 +0.6 172,332 - COO64_RS18205 0.19 -1.3 172,332 - COO64_RS18205 0.19 -0.3 172,332 - COO64_RS18205 0.19 -1.3 172,332 - COO64_RS18205 0.19 +0.3 172,332 - COO64_RS18205 0.19 +0.9 172,332 - COO64_RS18205 0.19 +1.5 172,940 + -0.1 172,940 + +0.2 172,941 - -1.0 173,001 + +0.6 173,001 + -0.4 173,001 + +0.6 173,001 + +0.1 173,001 + +0.6 173,001 + +0.8 173,001 + +0.8 173,001 + -0.1 173,002 - +0.1 173,021 - +1.1 173,179 + +0.5 173,180 - -0.5
Or see this region's nucleotide sequence