Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tauC and tauD are separated by 19 nucleotides tauD and betT are separated by 87 nucleotides betT and epsC are separated by 212 nucleotides
COO64_RS00775: tauC - taurine ABC transporter permease TauC, at 163,849 to 164,688
tauC
COO64_RS00780: tauD - taurine dioxygenase, at 164,708 to 165,541
tauD
COO64_RS00785: betT - choline transporter BetT, at 165,629 to 167,590
betT
COO64_RS00790: epsC - serine O-acetyltransferase EpsC, at 167,803 to 168,735
epsC
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.696 kb on + strand at 164.919 kb on - strand, within tauD at 165.066 kb on - strand, within tauD at 165.096 kb on + strand, within tauD at 165.096 kb on + strand, within tauD at 165.096 kb on + strand, within tauD at 165.096 kb on + strand, within tauD at 165.096 kb on + strand, within tauD at 165.096 kb on + strand, within tauD at 165.096 kb on + strand, within tauD at 165.096 kb on + strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.097 kb on - strand, within tauD at 165.104 kb on + strand, within tauD at 165.104 kb on + strand, within tauD at 165.105 kb on - strand, within tauD at 165.467 kb on + strand at 165.468 kb on - strand at 165.540 kb on - strand at 165.558 kb on + strand at 165.559 kb on - strand at 165.656 kb on - strand at 165.656 kb on - strand at 165.656 kb on - strand at 165.666 kb on + strand at 165.679 kb on + strand at 165.679 kb on + strand at 165.705 kb on + strand at 165.720 kb on + strand at 165.720 kb on + strand at 165.721 kb on - strand at 165.721 kb on - strand at 165.759 kb on + strand at 165.759 kb on + strand at 165.760 kb on - strand at 165.760 kb on - strand at 165.762 kb on + strand at 165.762 kb on + strand at 165.763 kb on - strand at 165.763 kb on - strand at 165.822 kb on + strand at 165.822 kb on + strand at 165.823 kb on - strand at 165.843 kb on + strand, within betT at 165.844 kb on - strand, within betT at 165.844 kb on - strand, within betT at 165.844 kb on - strand, within betT at 165.844 kb on - strand, within betT at 165.844 kb on - strand, within betT at 165.993 kb on + strand, within betT at 165.993 kb on + strand, within betT at 165.993 kb on + strand, within betT at 165.993 kb on + strand, within betT at 166.122 kb on + strand, within betT at 166.123 kb on - strand, within betT at 166.123 kb on - strand, within betT at 166.334 kb on + strand, within betT at 166.334 kb on + strand, within betT at 166.334 kb on + strand, within betT at 166.335 kb on - strand, within betT at 166.335 kb on - strand, within betT at 166.358 kb on - strand, within betT at 166.378 kb on + strand, within betT at 166.378 kb on + strand, within betT at 166.379 kb on - strand, within betT at 166.379 kb on - strand, within betT at 166.434 kb on + strand, within betT at 166.434 kb on + strand, within betT at 166.434 kb on + strand, within betT at 166.435 kb on - strand, within betT at 166.435 kb on - strand, within betT at 166.435 kb on - strand, within betT at 166.659 kb on + strand, within betT at 166.659 kb on + strand, within betT at 166.659 kb on + strand, within betT at 166.659 kb on + strand, within betT at 166.660 kb on - strand, within betT at 166.660 kb on - strand, within betT at 166.660 kb on - strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.701 kb on + strand, within betT at 166.702 kb on - strand, within betT at 166.702 kb on - strand, within betT at 166.702 kb on - strand, within betT at 166.702 kb on - strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.707 kb on + strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.708 kb on - strand, within betT at 166.744 kb on - strand, within betT at 166.959 kb on + strand, within betT at 166.960 kb on - strand, within betT at 166.960 kb on - strand, within betT at 167.091 kb on + strand, within betT at 167.092 kb on - strand, within betT at 167.092 kb on - strand, within betT at 167.122 kb on + strand, within betT at 167.122 kb on + strand, within betT at 167.122 kb on + strand, within betT at 167.122 kb on + strand, within betT at 167.122 kb on + strand, within betT at 167.122 kb on + strand, within betT at 167.122 kb on + strand, within betT at 167.123 kb on - strand, within betT at 167.123 kb on - strand, within betT at 167.140 kb on - strand, within betT at 167.306 kb on - strand, within betT at 167.306 kb on - strand, within betT at 167.306 kb on - strand, within betT at 167.349 kb on + strand, within betT at 167.349 kb on + strand, within betT at 167.349 kb on + strand, within betT at 167.350 kb on - strand, within betT at 167.350 kb on - strand, within betT at 167.433 kb on + strand at 167.433 kb on + strand at 167.433 kb on + strand at 167.433 kb on + strand at 167.433 kb on + strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.434 kb on - strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.454 kb on + strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.455 kb on - strand at 167.457 kb on + strand at 167.458 kb on - strand at 167.458 kb on - strand at 167.458 kb on - strand at 167.458 kb on - strand at 167.547 kb on - strand at 167.554 kb on + strand at 167.555 kb on - strand at 167.555 kb on - strand at 167.571 kb on + strand at 167.572 kb on - strand at 167.725 kb on - strand at 167.746 kb on + strand at 167.804 kb on + strand at 167.805 kb on - strand at 167.931 kb on + strand, within epsC at 167.931 kb on + strand, within epsC at 167.932 kb on - strand, within epsC at 167.932 kb on - strand, within epsC at 167.945 kb on + strand, within epsC at 167.945 kb on + strand, within epsC at 167.946 kb on - strand, within epsC at 167.946 kb on - strand, within epsC at 168.050 kb on + strand, within epsC at 168.050 kb on + strand, within epsC at 168.050 kb on + strand, within epsC at 168.050 kb on + strand, within epsC at 168.051 kb on - strand, within epsC at 168.051 kb on - strand, within epsC at 168.051 kb on - strand, within epsC at 168.051 kb on - strand, within epsC at 168.051 kb on - strand, within epsC at 168.051 kb on - strand, within epsC at 168.051 kb on - strand, within epsC at 168.218 kb on + strand, within epsC at 168.495 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.506 kb on + strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.507 kb on - strand, within epsC at 168.585 kb on + strand, within epsC at 168.586 kb on - strand, within epsC at 168.586 kb on - strand, within epsC at 168.586 kb on - strand, within epsC at 168.586 kb on - strand, within epsC at 168.586 kb on - strand, within epsC
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X remove 164,696 + +0.5 164,919 - tauD COO64_RS00780 0.25 -0.5 165,066 - tauD COO64_RS00780 0.43 -0.2 165,096 + tauD COO64_RS00780 0.47 -0.4 165,096 + tauD COO64_RS00780 0.47 -0.1 165,096 + tauD COO64_RS00780 0.47 -0.8 165,096 + tauD COO64_RS00780 0.47 +0.5 165,096 + tauD COO64_RS00780 0.47 +0.8 165,096 + tauD COO64_RS00780 0.47 +0.4 165,096 + tauD COO64_RS00780 0.47 +1.3 165,096 + tauD COO64_RS00780 0.47 +0.3 165,097 - tauD COO64_RS00780 0.47 +0.3 165,097 - tauD COO64_RS00780 0.47 -0.4 165,097 - tauD COO64_RS00780 0.47 +0.2 165,097 - tauD COO64_RS00780 0.47 -1.5 165,097 - tauD COO64_RS00780 0.47 +0.0 165,097 - tauD COO64_RS00780 0.47 +1.3 165,097 - tauD COO64_RS00780 0.47 +0.0 165,097 - tauD COO64_RS00780 0.47 -1.0 165,097 - tauD COO64_RS00780 0.47 +0.9 165,097 - tauD COO64_RS00780 0.47 -1.1 165,097 - tauD COO64_RS00780 0.47 -0.8 165,097 - tauD COO64_RS00780 0.47 +0.2 165,104 + tauD COO64_RS00780 0.47 +0.5 165,104 + tauD COO64_RS00780 0.47 +0.3 165,105 - tauD COO64_RS00780 0.48 -1.4 165,467 + -1.1 165,468 - -0.3 165,540 - -0.8 165,558 + -0.5 165,559 - -1.2 165,656 - +0.5 165,656 - +0.0 165,656 - +0.1 165,666 + +0.1 165,679 + +0.5 165,679 + +2.2 165,705 + -1.5 165,720 + +0.3 165,720 + -1.2 165,721 - +0.2 165,721 - -1.2 165,759 + +1.1 165,759 + +0.3 165,760 - -0.0 165,760 - +0.3 165,762 + +0.4 165,762 + -0.3 165,763 - -0.1 165,763 - -1.1 165,822 + +0.6 165,822 + +0.1 165,823 - +1.9 165,843 + betT COO64_RS00785 0.11 -1.1 165,844 - betT COO64_RS00785 0.11 +1.0 165,844 - betT COO64_RS00785 0.11 +0.5 165,844 - betT COO64_RS00785 0.11 -1.4 165,844 - betT COO64_RS00785 0.11 +0.9 165,844 - betT COO64_RS00785 0.11 +0.1 165,993 + betT COO64_RS00785 0.19 -0.2 165,993 + betT COO64_RS00785 0.19 +2.0 165,993 + betT COO64_RS00785 0.19 -0.1 165,993 + betT COO64_RS00785 0.19 -0.7 166,122 + betT COO64_RS00785 0.25 -1.4 166,123 - betT COO64_RS00785 0.25 +1.9 166,123 - betT COO64_RS00785 0.25 +0.6 166,334 + betT COO64_RS00785 0.36 +0.4 166,334 + betT COO64_RS00785 0.36 -1.1 166,334 + betT COO64_RS00785 0.36 -0.8 166,335 - betT COO64_RS00785 0.36 -0.3 166,335 - betT COO64_RS00785 0.36 -0.4 166,358 - betT COO64_RS00785 0.37 -0.6 166,378 + betT COO64_RS00785 0.38 +1.5 166,378 + betT COO64_RS00785 0.38 -0.8 166,379 - betT COO64_RS00785 0.38 -0.3 166,379 - betT COO64_RS00785 0.38 -0.3 166,434 + betT COO64_RS00785 0.41 +0.5 166,434 + betT COO64_RS00785 0.41 +0.2 166,434 + betT COO64_RS00785 0.41 +1.2 166,435 - betT COO64_RS00785 0.41 -0.6 166,435 - betT COO64_RS00785 0.41 +0.0 166,435 - betT COO64_RS00785 0.41 -0.8 166,659 + betT COO64_RS00785 0.52 +0.5 166,659 + betT COO64_RS00785 0.52 +0.4 166,659 + betT COO64_RS00785 0.52 +0.3 166,659 + betT COO64_RS00785 0.52 -0.1 166,660 - betT COO64_RS00785 0.53 -0.0 166,660 - betT COO64_RS00785 0.53 +1.1 166,660 - betT COO64_RS00785 0.53 -0.1 166,701 + betT COO64_RS00785 0.55 +0.6 166,701 + betT COO64_RS00785 0.55 -0.1 166,701 + betT COO64_RS00785 0.55 -0.4 166,701 + betT COO64_RS00785 0.55 +0.7 166,701 + betT COO64_RS00785 0.55 -0.1 166,701 + betT COO64_RS00785 0.55 -0.6 166,701 + betT COO64_RS00785 0.55 +0.5 166,701 + betT COO64_RS00785 0.55 -0.1 166,701 + betT COO64_RS00785 0.55 -0.5 166,702 - betT COO64_RS00785 0.55 -1.1 166,702 - betT COO64_RS00785 0.55 +0.3 166,702 - betT COO64_RS00785 0.55 -0.9 166,702 - betT COO64_RS00785 0.55 -0.2 166,707 + betT COO64_RS00785 0.55 +0.0 166,707 + betT COO64_RS00785 0.55 -0.7 166,707 + betT COO64_RS00785 0.55 -0.4 166,707 + betT COO64_RS00785 0.55 +0.4 166,707 + betT COO64_RS00785 0.55 +0.4 166,707 + betT COO64_RS00785 0.55 -0.0 166,707 + betT COO64_RS00785 0.55 -0.0 166,707 + betT COO64_RS00785 0.55 +1.3 166,707 + betT COO64_RS00785 0.55 +0.4 166,707 + betT COO64_RS00785 0.55 -0.7 166,707 + betT COO64_RS00785 0.55 -0.3 166,707 + betT COO64_RS00785 0.55 -2.4 166,708 - betT COO64_RS00785 0.55 -0.1 166,708 - betT COO64_RS00785 0.55 +1.4 166,708 - betT COO64_RS00785 0.55 +1.3 166,708 - betT COO64_RS00785 0.55 -0.3 166,708 - betT COO64_RS00785 0.55 +0.2 166,708 - betT COO64_RS00785 0.55 +0.7 166,708 - betT COO64_RS00785 0.55 -0.3 166,708 - betT COO64_RS00785 0.55 +0.3 166,708 - betT COO64_RS00785 0.55 +0.1 166,708 - betT COO64_RS00785 0.55 +0.8 166,708 - betT COO64_RS00785 0.55 +0.7 166,708 - betT COO64_RS00785 0.55 -0.9 166,744 - betT COO64_RS00785 0.57 +0.3 166,959 + betT COO64_RS00785 0.68 -0.0 166,960 - betT COO64_RS00785 0.68 -0.2 166,960 - betT COO64_RS00785 0.68 -1.7 167,091 + betT COO64_RS00785 0.75 -0.5 167,092 - betT COO64_RS00785 0.75 +0.5 167,092 - betT COO64_RS00785 0.75 +0.2 167,122 + betT COO64_RS00785 0.76 -1.0 167,122 + betT COO64_RS00785 0.76 +0.1 167,122 + betT COO64_RS00785 0.76 -0.1 167,122 + betT COO64_RS00785 0.76 +0.4 167,122 + betT COO64_RS00785 0.76 +0.1 167,122 + betT COO64_RS00785 0.76 +2.2 167,122 + betT COO64_RS00785 0.76 -0.3 167,123 - betT COO64_RS00785 0.76 +0.2 167,123 - betT COO64_RS00785 0.76 -0.2 167,140 - betT COO64_RS00785 0.77 +0.3 167,306 - betT COO64_RS00785 0.85 -0.3 167,306 - betT COO64_RS00785 0.85 -0.3 167,306 - betT COO64_RS00785 0.85 -0.1 167,349 + betT COO64_RS00785 0.88 -0.6 167,349 + betT COO64_RS00785 0.88 +0.1 167,349 + betT COO64_RS00785 0.88 +0.1 167,350 - betT COO64_RS00785 0.88 -0.6 167,350 - betT COO64_RS00785 0.88 -1.1 167,433 + +0.3 167,433 + -0.5 167,433 + +0.7 167,433 + +0.1 167,433 + -0.1 167,434 - -0.7 167,434 - +0.9 167,434 - +0.0 167,434 - +0.5 167,434 - -0.1 167,434 - +0.1 167,434 - -1.2 167,434 - +0.3 167,454 + -0.4 167,454 + -1.7 167,454 + -0.0 167,454 + -0.1 167,454 + +0.2 167,454 + -0.9 167,454 + +0.1 167,454 + +1.0 167,454 + -0.4 167,454 + +0.9 167,454 + -0.7 167,454 + +0.4 167,454 + -1.4 167,454 + -0.6 167,454 + +0.1 167,454 + -0.7 167,454 + +0.4 167,455 - -0.6 167,455 - -0.8 167,455 - -0.8 167,455 - -0.3 167,455 - -1.0 167,455 - -0.7 167,455 - -0.5 167,455 - +0.3 167,455 - -0.5 167,455 - +0.7 167,455 - +0.4 167,455 - -0.6 167,455 - -1.3 167,457 + +0.1 167,458 - +0.1 167,458 - +0.2 167,458 - -0.0 167,458 - +0.2 167,547 - -0.1 167,554 + -1.1 167,555 - +1.3 167,555 - +0.2 167,571 + -0.5 167,572 - +0.0 167,725 - -0.5 167,746 + -0.0 167,804 + +0.2 167,805 - +1.9 167,931 + epsC COO64_RS00790 0.14 +1.0 167,931 + epsC COO64_RS00790 0.14 +1.0 167,932 - epsC COO64_RS00790 0.14 -0.3 167,932 - epsC COO64_RS00790 0.14 -0.3 167,945 + epsC COO64_RS00790 0.15 -0.0 167,945 + epsC COO64_RS00790 0.15 -0.4 167,946 - epsC COO64_RS00790 0.15 -0.1 167,946 - epsC COO64_RS00790 0.15 +1.4 168,050 + epsC COO64_RS00790 0.26 +1.2 168,050 + epsC COO64_RS00790 0.26 -0.4 168,050 + epsC COO64_RS00790 0.26 +0.8 168,050 + epsC COO64_RS00790 0.26 +0.1 168,051 - epsC COO64_RS00790 0.27 -0.1 168,051 - epsC COO64_RS00790 0.27 +0.6 168,051 - epsC COO64_RS00790 0.27 -0.1 168,051 - epsC COO64_RS00790 0.27 -0.3 168,051 - epsC COO64_RS00790 0.27 -0.3 168,051 - epsC COO64_RS00790 0.27 -0.1 168,051 - epsC COO64_RS00790 0.27 +0.1 168,218 + epsC COO64_RS00790 0.44 -1.1 168,495 + epsC COO64_RS00790 0.74 +0.2 168,506 + epsC COO64_RS00790 0.75 +1.1 168,506 + epsC COO64_RS00790 0.75 -1.3 168,506 + epsC COO64_RS00790 0.75 -0.9 168,506 + epsC COO64_RS00790 0.75 -2.2 168,506 + epsC COO64_RS00790 0.75 -0.3 168,506 + epsC COO64_RS00790 0.75 -0.1 168,506 + epsC COO64_RS00790 0.75 -0.6 168,506 + epsC COO64_RS00790 0.75 -0.6 168,506 + epsC COO64_RS00790 0.75 -1.1 168,506 + epsC COO64_RS00790 0.75 +0.0 168,506 + epsC COO64_RS00790 0.75 +0.7 168,506 + epsC COO64_RS00790 0.75 +0.4 168,506 + epsC COO64_RS00790 0.75 +0.4 168,506 + epsC COO64_RS00790 0.75 +0.1 168,506 + epsC COO64_RS00790 0.75 +0.5 168,507 - epsC COO64_RS00790 0.75 -0.3 168,507 - epsC COO64_RS00790 0.75 +1.2 168,507 - epsC COO64_RS00790 0.75 +0.7 168,507 - epsC COO64_RS00790 0.75 -0.1 168,507 - epsC COO64_RS00790 0.75 +0.3 168,507 - epsC COO64_RS00790 0.75 +0.7 168,507 - epsC COO64_RS00790 0.75 +0.9 168,507 - epsC COO64_RS00790 0.75 -0.1 168,507 - epsC COO64_RS00790 0.75 -0.0 168,507 - epsC COO64_RS00790 0.75 +1.8 168,507 - epsC COO64_RS00790 0.75 -0.7 168,585 + epsC COO64_RS00790 0.84 -1.0 168,586 - epsC COO64_RS00790 0.84 +0.3 168,586 - epsC COO64_RS00790 0.84 -1.1 168,586 - epsC COO64_RS00790 0.84 +0.1 168,586 - epsC COO64_RS00790 0.84 +0.2 168,586 - epsC COO64_RS00790 0.84 -0.1
Or see this region's nucleotide sequence