Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05304

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05302 and BACOVA_05303 are separated by 33 nucleotidesBACOVA_05303 and BACOVA_05304 are separated by 124 nucleotidesBACOVA_05304 and BACOVA_05305 are separated by 51 nucleotides BACOVA_05302: BACOVA_05302 - potassium uptake protein, TrkH family, at 790,837 to 792,342 _05302 BACOVA_05303: BACOVA_05303 - hypothetical protein, at 792,376 to 792,627 _05303 BACOVA_05304: BACOVA_05304 - MATE efflux family protein, at 792,752 to 794,125 _05304 BACOVA_05305: BACOVA_05305 - hypothetical protein, at 794,177 to 795,160 _05305 Position (kb) 792 793 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 791.807 kb on + strand, within BACOVA_05302at 791.829 kb on + strand, within BACOVA_05302at 791.830 kb on - strand, within BACOVA_05302at 791.830 kb on - strand, within BACOVA_05302at 791.857 kb on + strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.860 kb on - strand, within BACOVA_05302at 791.863 kb on - strand, within BACOVA_05302at 791.863 kb on - strand, within BACOVA_05302at 791.885 kb on + strand, within BACOVA_05302at 791.886 kb on - strand, within BACOVA_05302at 791.940 kb on + strand, within BACOVA_05302at 792.030 kb on + strand, within BACOVA_05302at 792.030 kb on + strand, within BACOVA_05302at 792.057 kb on + strand, within BACOVA_05302at 792.057 kb on + strand, within BACOVA_05302at 792.062 kb on + strand, within BACOVA_05302at 792.067 kb on - strand, within BACOVA_05302at 792.101 kb on + strand, within BACOVA_05302at 792.168 kb on + strand, within BACOVA_05302at 792.168 kb on + strand, within BACOVA_05302at 792.179 kb on + strand, within BACOVA_05302at 792.180 kb on - strand, within BACOVA_05302at 792.221 kb on - strandat 792.221 kb on - strandat 792.237 kb on - strandat 792.340 kb on + strandat 792.341 kb on - strandat 792.459 kb on + strand, within BACOVA_05303at 792.460 kb on - strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.463 kb on + strand, within BACOVA_05303at 792.464 kb on - strand, within BACOVA_05303at 792.464 kb on - strand, within BACOVA_05303at 792.499 kb on + strand, within BACOVA_05303at 792.500 kb on - strand, within BACOVA_05303at 792.500 kb on - strand, within BACOVA_05303at 792.677 kb on - strandat 792.745 kb on + strandat 792.746 kb on - strandat 792.789 kb on + strandat 792.790 kb on - strandat 792.901 kb on - strand, within BACOVA_05304at 793.010 kb on + strand, within BACOVA_05304at 793.010 kb on + strand, within BACOVA_05304at 793.011 kb on - strand, within BACOVA_05304at 793.015 kb on + strand, within BACOVA_05304at 793.091 kb on - strand, within BACOVA_05304at 793.108 kb on - strand, within BACOVA_05304at 793.151 kb on + strand, within BACOVA_05304at 793.168 kb on + strand, within BACOVA_05304at 793.175 kb on - strand, within BACOVA_05304at 793.201 kb on + strand, within BACOVA_05304at 793.202 kb on - strand, within BACOVA_05304at 793.282 kb on + strand, within BACOVA_05304at 793.384 kb on + strand, within BACOVA_05304at 793.384 kb on + strand, within BACOVA_05304at 793.385 kb on - strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.388 kb on + strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.389 kb on - strand, within BACOVA_05304at 793.390 kb on + strand, within BACOVA_05304at 793.391 kb on - strand, within BACOVA_05304at 793.391 kb on - strand, within BACOVA_05304at 793.391 kb on - strand, within BACOVA_05304at 793.411 kb on - strand, within BACOVA_05304at 793.523 kb on - strand, within BACOVA_05304at 793.540 kb on + strand, within BACOVA_05304at 793.541 kb on - strand, within BACOVA_05304at 793.573 kb on + strand, within BACOVA_05304at 793.603 kb on + strand, within BACOVA_05304at 793.603 kb on + strand, within BACOVA_05304at 793.609 kb on + strand, within BACOVA_05304at 793.609 kb on + strand, within BACOVA_05304at 793.610 kb on - strand, within BACOVA_05304at 793.643 kb on + strand, within BACOVA_05304at 793.644 kb on - strand, within BACOVA_05304at 793.735 kb on + strand, within BACOVA_05304at 793.736 kb on - strand, within BACOVA_05304at 793.785 kb on + strand, within BACOVA_05304at 793.786 kb on - strand, within BACOVA_05304at 793.834 kb on + strand, within BACOVA_05304at 793.843 kb on + strand, within BACOVA_05304at 793.869 kb on + strand, within BACOVA_05304at 793.905 kb on - strand, within BACOVA_05304at 793.910 kb on + strand, within BACOVA_05304at 793.968 kb on - strand, within BACOVA_05304at 793.990 kb on + strandat 793.990 kb on + strandat 793.991 kb on - strandat 794.056 kb on + strandat 794.057 kb on - strandat 794.057 kb on - strandat 794.057 kb on - strandat 794.057 kb on - strandat 794.060 kb on + strandat 794.060 kb on + strandat 794.060 kb on + strandat 794.061 kb on - strandat 794.193 kb on + strandat 794.415 kb on - strand, within BACOVA_05305at 794.423 kb on - strand, within BACOVA_05305at 794.423 kb on - strand, within BACOVA_05305at 794.423 kb on - strand, within BACOVA_05305at 794.424 kb on + strand, within BACOVA_05305at 794.424 kb on + strand, within BACOVA_05305at 794.424 kb on + strand, within BACOVA_05305at 794.424 kb on + strand, within BACOVA_05305at 794.465 kb on - strand, within BACOVA_05305at 794.470 kb on - strand, within BACOVA_05305at 794.588 kb on + strand, within BACOVA_05305at 794.616 kb on + strand, within BACOVA_05305at 794.629 kb on + strand, within BACOVA_05305at 794.629 kb on + strand, within BACOVA_05305at 794.696 kb on + strand, within BACOVA_05305at 794.697 kb on - strand, within BACOVA_05305at 794.708 kb on + strand, within BACOVA_05305at 794.754 kb on - strand, within BACOVA_05305at 794.767 kb on + strand, within BACOVA_05305at 794.767 kb on + strand, within BACOVA_05305at 794.769 kb on + strand, within BACOVA_05305at 794.769 kb on + strand, within BACOVA_05305at 794.769 kb on + strand, within BACOVA_05305at 794.774 kb on - strand, within BACOVA_05305at 794.794 kb on + strand, within BACOVA_05305at 794.794 kb on + strand, within BACOVA_05305at 794.794 kb on + strand, within BACOVA_05305at 794.795 kb on - strand, within BACOVA_05305at 794.816 kb on + strand, within BACOVA_05305at 794.839 kb on - strand, within BACOVA_05305at 794.869 kb on + strand, within BACOVA_05305at 794.869 kb on + strand, within BACOVA_05305at 794.870 kb on - strand, within BACOVA_05305at 794.882 kb on - strand, within BACOVA_05305at 795.058 kb on - strand, within BACOVA_05305at 795.062 kb on + strandat 795.062 kb on + strandat 795.072 kb on + strandat 795.076 kb on + strandat 795.076 kb on + strandat 795.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
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791,807 + BACOVA_05302 0.64 +0.7
791,829 + BACOVA_05302 0.66 -0.8
791,830 - BACOVA_05302 0.66 -0.2
791,830 - BACOVA_05302 0.66 -0.7
791,857 + BACOVA_05302 0.68 -1.4
791,860 - BACOVA_05302 0.68 -0.1
791,860 - BACOVA_05302 0.68 -0.6
791,860 - BACOVA_05302 0.68 +0.3
791,860 - BACOVA_05302 0.68 -1.3
791,863 - BACOVA_05302 0.68 +1.0
791,863 - BACOVA_05302 0.68 +0.6
791,885 + BACOVA_05302 0.70 +0.2
791,886 - BACOVA_05302 0.70 -0.1
791,940 + BACOVA_05302 0.73 -0.4
792,030 + BACOVA_05302 0.79 +0.4
792,030 + BACOVA_05302 0.79 -0.2
792,057 + BACOVA_05302 0.81 +0.0
792,057 + BACOVA_05302 0.81 +0.5
792,062 + BACOVA_05302 0.81 -0.3
792,067 - BACOVA_05302 0.82 +0.0
792,101 + BACOVA_05302 0.84 +0.3
792,168 + BACOVA_05302 0.88 +0.9
792,168 + BACOVA_05302 0.88 -1.4
792,179 + BACOVA_05302 0.89 -0.1
792,180 - BACOVA_05302 0.89 -0.4
792,221 - +0.5
792,221 - -0.3
792,237 - -0.4
792,340 + -0.3
792,341 - -0.1
792,459 + BACOVA_05303 0.33 -1.0
792,460 - BACOVA_05303 0.33 -0.4
792,463 + BACOVA_05303 0.35 -0.1
792,463 + BACOVA_05303 0.35 -2.1
792,463 + BACOVA_05303 0.35 +1.2
792,463 + BACOVA_05303 0.35 +0.3
792,464 - BACOVA_05303 0.35 -0.9
792,464 - BACOVA_05303 0.35 -0.1
792,499 + BACOVA_05303 0.49 +0.0
792,500 - BACOVA_05303 0.49 -0.9
792,500 - BACOVA_05303 0.49 +0.1
792,677 - -0.4
792,745 + +0.6
792,746 - +0.2
792,789 + -0.1
792,790 - -0.0
792,901 - BACOVA_05304 0.11 -0.1
793,010 + BACOVA_05304 0.19 +0.5
793,010 + BACOVA_05304 0.19 -0.9
793,011 - BACOVA_05304 0.19 -0.0
793,015 + BACOVA_05304 0.19 -1.9
793,091 - BACOVA_05304 0.25 +0.4
793,108 - BACOVA_05304 0.26 -0.4
793,151 + BACOVA_05304 0.29 +0.4
793,168 + BACOVA_05304 0.30 -0.7
793,175 - BACOVA_05304 0.31 +1.2
793,201 + BACOVA_05304 0.33 -0.0
793,202 - BACOVA_05304 0.33 -0.2
793,282 + BACOVA_05304 0.39 -0.2
793,384 + BACOVA_05304 0.46 +0.7
793,384 + BACOVA_05304 0.46 -0.4
793,385 - BACOVA_05304 0.46 +0.9
793,388 + BACOVA_05304 0.46 +0.7
793,388 + BACOVA_05304 0.46 -0.6
793,388 + BACOVA_05304 0.46 -1.3
793,388 + BACOVA_05304 0.46 +0.6
793,388 + BACOVA_05304 0.46 +0.6
793,389 - BACOVA_05304 0.46 -0.2
793,389 - BACOVA_05304 0.46 +0.6
793,389 - BACOVA_05304 0.46 +0.3
793,389 - BACOVA_05304 0.46 +0.8
793,389 - BACOVA_05304 0.46 +0.4
793,389 - BACOVA_05304 0.46 -0.1
793,390 + BACOVA_05304 0.46 +0.6
793,391 - BACOVA_05304 0.47 -0.4
793,391 - BACOVA_05304 0.47 -0.2
793,391 - BACOVA_05304 0.47 -1.1
793,411 - BACOVA_05304 0.48 +2.3
793,523 - BACOVA_05304 0.56 -1.9
793,540 + BACOVA_05304 0.57 -0.9
793,541 - BACOVA_05304 0.57 -0.5
793,573 + BACOVA_05304 0.60 -1.3
793,603 + BACOVA_05304 0.62 +0.5
793,603 + BACOVA_05304 0.62 +1.3
793,609 + BACOVA_05304 0.62 +0.2
793,609 + BACOVA_05304 0.62 -0.5
793,610 - BACOVA_05304 0.62 +0.1
793,643 + BACOVA_05304 0.65 -0.8
793,644 - BACOVA_05304 0.65 +1.5
793,735 + BACOVA_05304 0.72 -0.1
793,736 - BACOVA_05304 0.72 +0.1
793,785 + BACOVA_05304 0.75 +0.0
793,786 - BACOVA_05304 0.75 +0.1
793,834 + BACOVA_05304 0.79 +0.7
793,843 + BACOVA_05304 0.79 -0.4
793,869 + BACOVA_05304 0.81 -0.1
793,905 - BACOVA_05304 0.84 +0.0
793,910 + BACOVA_05304 0.84 -1.0
793,968 - BACOVA_05304 0.89 +0.1
793,990 + +0.1
793,990 + -0.6
793,991 - +0.0
794,056 + -0.2
794,057 - +0.9
794,057 - -0.1
794,057 - -1.9
794,057 - -0.4
794,060 + -1.0
794,060 + +0.1
794,060 + +1.2
794,061 - +0.6
794,193 + -3.3
794,415 - BACOVA_05305 0.24 -1.5
794,423 - BACOVA_05305 0.25 -0.7
794,423 - BACOVA_05305 0.25 +2.1
794,423 - BACOVA_05305 0.25 +0.6
794,424 + BACOVA_05305 0.25 +0.1
794,424 + BACOVA_05305 0.25 +0.5
794,424 + BACOVA_05305 0.25 -0.7
794,424 + BACOVA_05305 0.25 +0.5
794,465 - BACOVA_05305 0.29 -0.7
794,470 - BACOVA_05305 0.30 -0.1
794,588 + BACOVA_05305 0.42 -0.4
794,616 + BACOVA_05305 0.45 +1.4
794,629 + BACOVA_05305 0.46 -1.8
794,629 + BACOVA_05305 0.46 +1.2
794,696 + BACOVA_05305 0.53 +0.5
794,697 - BACOVA_05305 0.53 +0.0
794,708 + BACOVA_05305 0.54 -0.9
794,754 - BACOVA_05305 0.59 -1.9
794,767 + BACOVA_05305 0.60 +0.1
794,767 + BACOVA_05305 0.60 +0.1
794,769 + BACOVA_05305 0.60 -0.2
794,769 + BACOVA_05305 0.60 +0.2
794,769 + BACOVA_05305 0.60 +0.5
794,774 - BACOVA_05305 0.61 -1.5
794,794 + BACOVA_05305 0.63 -0.8
794,794 + BACOVA_05305 0.63 +0.3
794,794 + BACOVA_05305 0.63 +0.4
794,795 - BACOVA_05305 0.63 -2.0
794,816 + BACOVA_05305 0.65 -0.6
794,839 - BACOVA_05305 0.67 -0.5
794,869 + BACOVA_05305 0.70 -0.9
794,869 + BACOVA_05305 0.70 -0.1
794,870 - BACOVA_05305 0.70 -0.5
794,882 - BACOVA_05305 0.72 +0.2
795,058 - BACOVA_05305 0.90 -0.1
795,062 + -1.6
795,062 + +0.5
795,072 + -1.0
795,076 + -1.3
795,076 + -0.1
795,122 + +1.2

Or see this region's nucleotide sequence