Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04765 and BACOVA_04766 are separated by 1 nucleotides BACOVA_04766 and BACOVA_04767 are separated by 26 nucleotides BACOVA_04767 and BACOVA_04768 overlap by 4 nucleotides BACOVA_04768 and BACOVA_04769 are separated by 20 nucleotides
BACOVA_04765: BACOVA_04765 - hypothetical protein, at 120,119 to 120,865
_04765
BACOVA_04766: BACOVA_04766 - hypothetical protein, at 120,867 to 121,523
_04766
BACOVA_04767: BACOVA_04767 - hypothetical protein, at 121,550 to 122,074
_04767
BACOVA_04768: BACOVA_04768 - conjugative transposon TraN protein, at 122,071 to 122,922
_04768
BACOVA_04769: BACOVA_04769 - DNA (cytosine-5-)-methyltransferase, at 122,943 to 123,746
_04769
Position (kb) 121
122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 120.576 kb on + strand, within BACOVA_04765 at 120.680 kb on - strand, within BACOVA_04765 at 120.793 kb on - strand at 120.798 kb on - strand at 120.824 kb on + strand at 120.829 kb on + strand at 120.841 kb on + strand at 120.841 kb on + strand at 120.842 kb on - strand at 120.846 kb on - strand at 120.846 kb on - strand at 120.885 kb on + strand at 120.886 kb on - strand at 120.914 kb on - strand at 121.012 kb on + strand, within BACOVA_04766 at 121.012 kb on + strand, within BACOVA_04766 at 121.013 kb on - strand, within BACOVA_04766 at 121.013 kb on - strand, within BACOVA_04766 at 121.081 kb on + strand, within BACOVA_04766 at 121.081 kb on + strand, within BACOVA_04766 at 121.112 kb on + strand, within BACOVA_04766 at 121.114 kb on + strand, within BACOVA_04766 at 121.114 kb on + strand, within BACOVA_04766 at 121.186 kb on + strand, within BACOVA_04766 at 121.378 kb on + strand, within BACOVA_04766 at 121.378 kb on + strand, within BACOVA_04766 at 121.388 kb on - strand, within BACOVA_04766 at 121.418 kb on + strand, within BACOVA_04766 at 121.418 kb on + strand, within BACOVA_04766 at 121.419 kb on - strand, within BACOVA_04766 at 121.419 kb on - strand, within BACOVA_04766 at 121.446 kb on + strand, within BACOVA_04766 at 121.518 kb on + strand at 121.518 kb on + strand at 121.519 kb on - strand at 121.610 kb on + strand, within BACOVA_04767 at 121.610 kb on + strand, within BACOVA_04767 at 121.782 kb on + strand, within BACOVA_04767 at 121.837 kb on + strand, within BACOVA_04767 at 121.905 kb on + strand, within BACOVA_04767 at 121.923 kb on + strand, within BACOVA_04767 at 122.304 kb on + strand, within BACOVA_04768 at 122.420 kb on + strand, within BACOVA_04768 at 122.424 kb on + strand, within BACOVA_04768 at 122.425 kb on - strand, within BACOVA_04768 at 122.552 kb on + strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.628 kb on - strand, within BACOVA_04768 at 122.760 kb on + strand, within BACOVA_04768 at 122.840 kb on + strand at 122.840 kb on + strand at 122.840 kb on + strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.904 kb on + strand at 122.905 kb on - strand at 122.905 kb on - strand at 122.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 120,576 + BACOVA_04765 0.61 +0.6 120,680 - BACOVA_04765 0.75 -0.5 120,793 - -1.3 120,798 - +0.1 120,824 + -0.1 120,829 + -0.1 120,841 + +0.3 120,841 + -1.3 120,842 - +1.0 120,846 - -0.2 120,846 - +0.1 120,885 + -3.1 120,886 - -1.3 120,914 - -0.7 121,012 + BACOVA_04766 0.22 -0.0 121,012 + BACOVA_04766 0.22 -0.5 121,013 - BACOVA_04766 0.22 -0.7 121,013 - BACOVA_04766 0.22 +0.8 121,081 + BACOVA_04766 0.33 -0.6 121,081 + BACOVA_04766 0.33 -0.2 121,112 + BACOVA_04766 0.37 +1.0 121,114 + BACOVA_04766 0.38 -0.5 121,114 + BACOVA_04766 0.38 +0.0 121,186 + BACOVA_04766 0.49 +0.4 121,378 + BACOVA_04766 0.78 -0.4 121,378 + BACOVA_04766 0.78 -0.8 121,388 - BACOVA_04766 0.79 -0.9 121,418 + BACOVA_04766 0.84 -1.3 121,418 + BACOVA_04766 0.84 +0.0 121,419 - BACOVA_04766 0.84 -0.2 121,419 - BACOVA_04766 0.84 -1.0 121,446 + BACOVA_04766 0.88 +0.7 121,518 + -0.7 121,518 + +0.4 121,519 - -0.5 121,610 + BACOVA_04767 0.11 +0.0 121,610 + BACOVA_04767 0.11 +1.6 121,782 + BACOVA_04767 0.44 +0.1 121,837 + BACOVA_04767 0.55 +1.4 121,905 + BACOVA_04767 0.68 -0.1 121,923 + BACOVA_04767 0.71 +0.0 122,304 + BACOVA_04768 0.27 +2.1 122,420 + BACOVA_04768 0.41 +1.3 122,424 + BACOVA_04768 0.41 +1.4 122,425 - BACOVA_04768 0.42 -0.2 122,552 + BACOVA_04768 0.56 -1.0 122,616 - BACOVA_04768 0.64 -1.0 122,616 - BACOVA_04768 0.64 -0.2 122,627 + BACOVA_04768 0.65 +0.3 122,627 + BACOVA_04768 0.65 +1.1 122,628 - BACOVA_04768 0.65 +0.5 122,760 + BACOVA_04768 0.81 +0.1 122,840 + +0.4 122,840 + -0.7 122,840 + +0.1 122,841 - +0.3 122,841 - -1.0 122,841 - -2.0 122,841 - -0.6 122,904 + +0.2 122,905 - -1.2 122,905 - -1.5 122,909 - -0.3
Or see this region's nucleotide sequence