Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04515

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04514 and BACOVA_04515 overlap by 4 nucleotidesBACOVA_04515 and BACOVA_04516 are separated by 134 nucleotides BACOVA_04514: BACOVA_04514 - hypothetical protein, at 453,342 to 454,667 _04514 BACOVA_04515: BACOVA_04515 - hypothetical protein, at 454,664 to 455,869 _04515 BACOVA_04516: BACOVA_04516 - peptidase C1-like family, at 456,004 to 457,188 _04516 Position (kb) 454 455 456Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 453.675 kb on + strand, within BACOVA_04514at 453.676 kb on - strand, within BACOVA_04514at 453.692 kb on - strand, within BACOVA_04514at 453.746 kb on + strand, within BACOVA_04514at 453.757 kb on + strand, within BACOVA_04514at 453.757 kb on + strand, within BACOVA_04514at 453.757 kb on + strand, within BACOVA_04514at 453.758 kb on - strand, within BACOVA_04514at 453.758 kb on - strand, within BACOVA_04514at 453.758 kb on - strand, within BACOVA_04514at 453.760 kb on - strand, within BACOVA_04514at 453.767 kb on + strand, within BACOVA_04514at 453.771 kb on - strand, within BACOVA_04514at 453.781 kb on - strand, within BACOVA_04514at 453.939 kb on + strand, within BACOVA_04514at 453.983 kb on + strand, within BACOVA_04514at 453.984 kb on - strand, within BACOVA_04514at 454.029 kb on + strand, within BACOVA_04514at 454.167 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.218 kb on - strand, within BACOVA_04514at 454.218 kb on - strand, within BACOVA_04514at 454.218 kb on - strand, within BACOVA_04514at 454.221 kb on + strand, within BACOVA_04514at 454.221 kb on + strand, within BACOVA_04514at 454.247 kb on - strand, within BACOVA_04514at 454.297 kb on + strand, within BACOVA_04514at 454.298 kb on - strand, within BACOVA_04514at 454.303 kb on + strand, within BACOVA_04514at 454.303 kb on + strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.324 kb on - strand, within BACOVA_04514at 454.362 kb on + strand, within BACOVA_04514at 454.362 kb on + strand, within BACOVA_04514at 454.424 kb on - strand, within BACOVA_04514at 454.459 kb on - strand, within BACOVA_04514at 454.471 kb on - strand, within BACOVA_04514at 454.547 kb on - strandat 454.547 kb on - strandat 454.569 kb on + strandat 454.637 kb on + strandat 454.761 kb on + strandat 454.761 kb on + strandat 454.774 kb on + strandat 454.793 kb on + strand, within BACOVA_04515at 454.843 kb on + strand, within BACOVA_04515at 454.979 kb on + strand, within BACOVA_04515at 454.980 kb on + strand, within BACOVA_04515at 454.980 kb on + strand, within BACOVA_04515at 454.999 kb on + strand, within BACOVA_04515at 455.090 kb on + strand, within BACOVA_04515at 455.095 kb on + strand, within BACOVA_04515at 455.096 kb on - strand, within BACOVA_04515at 455.098 kb on + strand, within BACOVA_04515at 455.099 kb on - strand, within BACOVA_04515at 455.134 kb on + strand, within BACOVA_04515at 455.198 kb on + strand, within BACOVA_04515at 455.198 kb on + strand, within BACOVA_04515at 455.199 kb on - strand, within BACOVA_04515at 455.269 kb on + strand, within BACOVA_04515at 455.292 kb on + strand, within BACOVA_04515at 455.297 kb on + strand, within BACOVA_04515at 455.297 kb on + strand, within BACOVA_04515at 455.309 kb on - strand, within BACOVA_04515at 455.309 kb on - strand, within BACOVA_04515at 455.310 kb on + strand, within BACOVA_04515at 455.311 kb on - strand, within BACOVA_04515at 455.343 kb on + strand, within BACOVA_04515at 455.343 kb on + strand, within BACOVA_04515at 455.343 kb on + strand, within BACOVA_04515at 455.344 kb on - strand, within BACOVA_04515at 455.344 kb on - strand, within BACOVA_04515at 455.345 kb on + strand, within BACOVA_04515at 455.374 kb on + strand, within BACOVA_04515at 455.377 kb on + strand, within BACOVA_04515at 455.378 kb on - strand, within BACOVA_04515at 455.382 kb on + strand, within BACOVA_04515at 455.383 kb on - strand, within BACOVA_04515at 455.384 kb on + strand, within BACOVA_04515at 455.385 kb on - strand, within BACOVA_04515at 455.385 kb on - strand, within BACOVA_04515at 455.413 kb on + strand, within BACOVA_04515at 455.477 kb on + strand, within BACOVA_04515at 455.487 kb on + strand, within BACOVA_04515at 455.488 kb on - strand, within BACOVA_04515at 455.597 kb on + strand, within BACOVA_04515at 455.598 kb on - strand, within BACOVA_04515at 455.599 kb on + strand, within BACOVA_04515at 455.616 kb on - strand, within BACOVA_04515at 455.621 kb on - strand, within BACOVA_04515at 455.651 kb on - strand, within BACOVA_04515at 455.663 kb on + strand, within BACOVA_04515at 455.663 kb on + strand, within BACOVA_04515at 455.663 kb on + strand, within BACOVA_04515at 455.699 kb on + strand, within BACOVA_04515at 455.764 kb on + strandat 455.792 kb on - strandat 455.893 kb on - strandat 455.893 kb on - strandat 455.897 kb on + strandat 455.942 kb on + strandat 455.963 kb on + strandat 456.123 kb on + strand, within BACOVA_04516at 456.204 kb on + strand, within BACOVA_04516at 456.275 kb on + strand, within BACOVA_04516at 456.275 kb on + strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.276 kb on - strand, within BACOVA_04516at 456.326 kb on + strand, within BACOVA_04516at 456.327 kb on - strand, within BACOVA_04516at 456.327 kb on - strand, within BACOVA_04516at 456.331 kb on + strand, within BACOVA_04516at 456.332 kb on - strand, within BACOVA_04516at 456.332 kb on - strand, within BACOVA_04516at 456.346 kb on + strand, within BACOVA_04516at 456.347 kb on - strand, within BACOVA_04516at 456.378 kb on + strand, within BACOVA_04516at 456.379 kb on - strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.381 kb on + strand, within BACOVA_04516at 456.382 kb on - strand, within BACOVA_04516at 456.385 kb on + strand, within BACOVA_04516at 456.386 kb on - strand, within BACOVA_04516at 456.386 kb on - strand, within BACOVA_04516at 456.409 kb on - strand, within BACOVA_04516at 456.465 kb on - strand, within BACOVA_04516at 456.498 kb on - strand, within BACOVA_04516at 456.498 kb on - strand, within BACOVA_04516at 456.508 kb on + strand, within BACOVA_04516at 456.517 kb on + strand, within BACOVA_04516at 456.518 kb on - strand, within BACOVA_04516at 456.518 kb on - strand, within BACOVA_04516at 456.548 kb on - strand, within BACOVA_04516at 456.563 kb on - strand, within BACOVA_04516at 456.603 kb on + strand, within BACOVA_04516at 456.610 kb on + strand, within BACOVA_04516at 456.610 kb on + strand, within BACOVA_04516at 456.611 kb on - strand, within BACOVA_04516at 456.615 kb on - strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.630 kb on + strand, within BACOVA_04516at 456.631 kb on - strand, within BACOVA_04516at 456.646 kb on + strand, within BACOVA_04516at 456.647 kb on - strand, within BACOVA_04516at 456.675 kb on + strand, within BACOVA_04516at 456.685 kb on - strand, within BACOVA_04516at 456.698 kb on - strand, within BACOVA_04516at 456.754 kb on + strand, within BACOVA_04516at 456.756 kb on + strand, within BACOVA_04516

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
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453,675 + BACOVA_04514 0.25 -0.4
453,676 - BACOVA_04514 0.25 -1.8
453,692 - BACOVA_04514 0.26 +0.9
453,746 + BACOVA_04514 0.30 +0.1
453,757 + BACOVA_04514 0.31 -0.9
453,757 + BACOVA_04514 0.31 +0.8
453,757 + BACOVA_04514 0.31 -0.9
453,758 - BACOVA_04514 0.31 -0.6
453,758 - BACOVA_04514 0.31 -0.9
453,758 - BACOVA_04514 0.31 -0.8
453,760 - BACOVA_04514 0.32 -2.6
453,767 + BACOVA_04514 0.32 +0.3
453,771 - BACOVA_04514 0.32 +0.5
453,781 - BACOVA_04514 0.33 -2.5
453,939 + BACOVA_04514 0.45 +0.3
453,983 + BACOVA_04514 0.48 -0.1
453,984 - BACOVA_04514 0.48 -1.0
454,029 + BACOVA_04514 0.52 -0.2
454,167 + BACOVA_04514 0.62 -0.4
454,217 + BACOVA_04514 0.66 +0.3
454,217 + BACOVA_04514 0.66 +0.5
454,217 + BACOVA_04514 0.66 -0.6
454,217 + BACOVA_04514 0.66 -1.1
454,218 - BACOVA_04514 0.66 +0.7
454,218 - BACOVA_04514 0.66 -0.5
454,218 - BACOVA_04514 0.66 +0.5
454,221 + BACOVA_04514 0.66 -0.8
454,221 + BACOVA_04514 0.66 +0.5
454,247 - BACOVA_04514 0.68 -0.1
454,297 + BACOVA_04514 0.72 +0.5
454,298 - BACOVA_04514 0.72 +0.3
454,303 + BACOVA_04514 0.72 -0.0
454,303 + BACOVA_04514 0.72 -1.9
454,304 - BACOVA_04514 0.73 +0.9
454,304 - BACOVA_04514 0.73 -1.1
454,304 - BACOVA_04514 0.73 -0.4
454,304 - BACOVA_04514 0.73 +0.3
454,324 - BACOVA_04514 0.74 -0.3
454,362 + BACOVA_04514 0.77 +1.1
454,362 + BACOVA_04514 0.77 +1.4
454,424 - BACOVA_04514 0.82 +0.5
454,459 - BACOVA_04514 0.84 -0.1
454,471 - BACOVA_04514 0.85 -1.1
454,547 - -0.6
454,547 - -0.3
454,569 + +1.9
454,637 + -0.4
454,761 + -1.5
454,761 + +0.8
454,774 + +1.1
454,793 + BACOVA_04515 0.11 +0.5
454,843 + BACOVA_04515 0.15 -2.5
454,979 + BACOVA_04515 0.26 -0.5
454,980 + BACOVA_04515 0.26 +0.1
454,980 + BACOVA_04515 0.26 +1.8
454,999 + BACOVA_04515 0.28 -0.7
455,090 + BACOVA_04515 0.35 -0.6
455,095 + BACOVA_04515 0.36 -1.0
455,096 - BACOVA_04515 0.36 -2.4
455,098 + BACOVA_04515 0.36 +0.2
455,099 - BACOVA_04515 0.36 -0.2
455,134 + BACOVA_04515 0.39 -0.3
455,198 + BACOVA_04515 0.44 +0.0
455,198 + BACOVA_04515 0.44 -1.4
455,199 - BACOVA_04515 0.44 +0.1
455,269 + BACOVA_04515 0.50 +0.1
455,292 + BACOVA_04515 0.52 +0.5
455,297 + BACOVA_04515 0.52 -0.1
455,297 + BACOVA_04515 0.52 -0.4
455,309 - BACOVA_04515 0.53 -0.2
455,309 - BACOVA_04515 0.53 -1.3
455,310 + BACOVA_04515 0.54 +0.9
455,311 - BACOVA_04515 0.54 +0.8
455,343 + BACOVA_04515 0.56 -1.0
455,343 + BACOVA_04515 0.56 +1.3
455,343 + BACOVA_04515 0.56 -0.7
455,344 - BACOVA_04515 0.56 +0.3
455,344 - BACOVA_04515 0.56 -1.7
455,345 + BACOVA_04515 0.56 -0.1
455,374 + BACOVA_04515 0.59 -1.5
455,377 + BACOVA_04515 0.59 +0.1
455,378 - BACOVA_04515 0.59 -0.5
455,382 + BACOVA_04515 0.60 -0.4
455,383 - BACOVA_04515 0.60 +0.2
455,384 + BACOVA_04515 0.60 -0.7
455,385 - BACOVA_04515 0.60 +0.7
455,385 - BACOVA_04515 0.60 +0.1
455,413 + BACOVA_04515 0.62 -0.1
455,477 + BACOVA_04515 0.67 -0.4
455,487 + BACOVA_04515 0.68 +1.1
455,488 - BACOVA_04515 0.68 +0.5
455,597 + BACOVA_04515 0.77 -1.3
455,598 - BACOVA_04515 0.77 -0.1
455,599 + BACOVA_04515 0.78 -0.4
455,616 - BACOVA_04515 0.79 +0.0
455,621 - BACOVA_04515 0.79 -0.5
455,651 - BACOVA_04515 0.82 +0.3
455,663 + BACOVA_04515 0.83 -1.1
455,663 + BACOVA_04515 0.83 -0.8
455,663 + BACOVA_04515 0.83 +0.8
455,699 + BACOVA_04515 0.86 -0.3
455,764 + -0.2
455,792 - -0.1
455,893 - -0.7
455,893 - -0.6
455,897 + +1.6
455,942 + -0.3
455,963 + -0.1
456,123 + BACOVA_04516 0.10 +0.5
456,204 + BACOVA_04516 0.17 +0.9
456,275 + BACOVA_04516 0.23 +0.1
456,275 + BACOVA_04516 0.23 +0.5
456,276 - BACOVA_04516 0.23 -2.8
456,276 - BACOVA_04516 0.23 -0.5
456,276 - BACOVA_04516 0.23 +0.5
456,276 - BACOVA_04516 0.23 -2.9
456,326 + BACOVA_04516 0.27 +0.1
456,327 - BACOVA_04516 0.27 -0.7
456,327 - BACOVA_04516 0.27 -0.9
456,331 + BACOVA_04516 0.28 -0.1
456,332 - BACOVA_04516 0.28 +0.8
456,332 - BACOVA_04516 0.28 -0.9
456,346 + BACOVA_04516 0.29 +0.6
456,347 - BACOVA_04516 0.29 +0.1
456,378 + BACOVA_04516 0.32 +0.5
456,379 - BACOVA_04516 0.32 +0.2
456,381 + BACOVA_04516 0.32 -0.8
456,381 + BACOVA_04516 0.32 -0.3
456,381 + BACOVA_04516 0.32 +0.1
456,381 + BACOVA_04516 0.32 +0.7
456,382 - BACOVA_04516 0.32 +0.9
456,385 + BACOVA_04516 0.32 -1.8
456,386 - BACOVA_04516 0.32 -0.9
456,386 - BACOVA_04516 0.32 -0.3
456,409 - BACOVA_04516 0.34 -0.9
456,465 - BACOVA_04516 0.39 -0.1
456,498 - BACOVA_04516 0.42 -0.7
456,498 - BACOVA_04516 0.42 +0.1
456,508 + BACOVA_04516 0.43 +0.0
456,517 + BACOVA_04516 0.43 -0.5
456,518 - BACOVA_04516 0.43 -1.1
456,518 - BACOVA_04516 0.43 -2.0
456,548 - BACOVA_04516 0.46 +0.5
456,563 - BACOVA_04516 0.47 -0.1
456,603 + BACOVA_04516 0.51 +0.4
456,610 + BACOVA_04516 0.51 +0.1
456,610 + BACOVA_04516 0.51 -0.6
456,611 - BACOVA_04516 0.51 +0.2
456,615 - BACOVA_04516 0.52 +0.4
456,630 + BACOVA_04516 0.53 -0.1
456,630 + BACOVA_04516 0.53 -0.9
456,630 + BACOVA_04516 0.53 -0.2
456,630 + BACOVA_04516 0.53 -1.8
456,631 - BACOVA_04516 0.53 +0.3
456,646 + BACOVA_04516 0.54 -0.1
456,647 - BACOVA_04516 0.54 -0.3
456,675 + BACOVA_04516 0.57 -1.1
456,685 - BACOVA_04516 0.57 -1.5
456,698 - BACOVA_04516 0.59 +0.0
456,754 + BACOVA_04516 0.63 -0.9
456,756 + BACOVA_04516 0.63 +0.2

Or see this region's nucleotide sequence