Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04514

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04513 and BACOVA_04514 are separated by 191 nucleotidesBACOVA_04514 and BACOVA_04515 overlap by 4 nucleotides BACOVA_04513: BACOVA_04513 - kelch repeat protein, at 452,092 to 453,150 _04513 BACOVA_04514: BACOVA_04514 - hypothetical protein, at 453,342 to 454,667 _04514 BACOVA_04515: BACOVA_04515 - hypothetical protein, at 454,664 to 455,869 _04515 Position (kb) 453 454 455Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 452.358 kb on - strand, within BACOVA_04513at 452.370 kb on + strand, within BACOVA_04513at 452.391 kb on - strand, within BACOVA_04513at 452.406 kb on + strand, within BACOVA_04513at 452.504 kb on + strand, within BACOVA_04513at 452.505 kb on - strand, within BACOVA_04513at 452.505 kb on - strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.509 kb on + strand, within BACOVA_04513at 452.586 kb on + strand, within BACOVA_04513at 452.586 kb on + strand, within BACOVA_04513at 452.628 kb on - strand, within BACOVA_04513at 452.640 kb on - strand, within BACOVA_04513at 452.640 kb on - strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.687 kb on + strand, within BACOVA_04513at 452.688 kb on - strand, within BACOVA_04513at 452.688 kb on - strand, within BACOVA_04513at 452.688 kb on - strand, within BACOVA_04513at 452.703 kb on - strand, within BACOVA_04513at 452.703 kb on - strand, within BACOVA_04513at 452.703 kb on - strand, within BACOVA_04513at 452.706 kb on + strand, within BACOVA_04513at 452.706 kb on + strand, within BACOVA_04513at 452.706 kb on + strand, within BACOVA_04513at 452.771 kb on + strand, within BACOVA_04513at 452.826 kb on + strand, within BACOVA_04513at 452.827 kb on - strand, within BACOVA_04513at 452.827 kb on - strand, within BACOVA_04513at 452.828 kb on + strand, within BACOVA_04513at 452.843 kb on - strand, within BACOVA_04513at 452.843 kb on - strand, within BACOVA_04513at 452.843 kb on - strand, within BACOVA_04513at 452.856 kb on + strand, within BACOVA_04513at 452.895 kb on + strand, within BACOVA_04513at 452.896 kb on - strand, within BACOVA_04513at 452.896 kb on - strand, within BACOVA_04513at 452.984 kb on + strand, within BACOVA_04513at 452.985 kb on - strand, within BACOVA_04513at 452.989 kb on + strand, within BACOVA_04513at 452.990 kb on - strand, within BACOVA_04513at 453.069 kb on + strandat 453.072 kb on - strandat 453.075 kb on - strandat 453.087 kb on + strandat 453.087 kb on + strandat 453.133 kb on - strandat 453.150 kb on + strandat 453.154 kb on + strandat 453.155 kb on - strandat 453.155 kb on - strandat 453.167 kb on - strandat 453.230 kb on + strandat 453.230 kb on + strandat 453.231 kb on - strandat 453.231 kb on - strandat 453.235 kb on - strandat 453.293 kb on - strandat 453.339 kb on + strandat 453.355 kb on + strandat 453.355 kb on + strandat 453.356 kb on - strandat 453.356 kb on - strandat 453.376 kb on + strandat 453.400 kb on + strandat 453.419 kb on - strandat 453.464 kb on + strandat 453.465 kb on - strandat 453.465 kb on - strandat 453.471 kb on - strandat 453.478 kb on + strand, within BACOVA_04514at 453.479 kb on - strand, within BACOVA_04514at 453.485 kb on + strand, within BACOVA_04514at 453.490 kb on + strand, within BACOVA_04514at 453.491 kb on - strand, within BACOVA_04514at 453.493 kb on + strand, within BACOVA_04514at 453.535 kb on + strand, within BACOVA_04514at 453.557 kb on - strand, within BACOVA_04514at 453.569 kb on + strand, within BACOVA_04514at 453.592 kb on - strand, within BACOVA_04514at 453.599 kb on - strand, within BACOVA_04514at 453.599 kb on - strand, within BACOVA_04514at 453.599 kb on - strand, within BACOVA_04514at 453.606 kb on + strand, within BACOVA_04514at 453.630 kb on + strand, within BACOVA_04514at 453.652 kb on + strand, within BACOVA_04514at 453.652 kb on + strand, within BACOVA_04514at 453.653 kb on - strand, within BACOVA_04514at 453.661 kb on - strand, within BACOVA_04514at 453.675 kb on + strand, within BACOVA_04514at 453.676 kb on - strand, within BACOVA_04514at 453.692 kb on - strand, within BACOVA_04514at 453.746 kb on + strand, within BACOVA_04514at 453.757 kb on + strand, within BACOVA_04514at 453.757 kb on + strand, within BACOVA_04514at 453.757 kb on + strand, within BACOVA_04514at 453.758 kb on - strand, within BACOVA_04514at 453.758 kb on - strand, within BACOVA_04514at 453.758 kb on - strand, within BACOVA_04514at 453.760 kb on - strand, within BACOVA_04514at 453.767 kb on + strand, within BACOVA_04514at 453.771 kb on - strand, within BACOVA_04514at 453.781 kb on - strand, within BACOVA_04514at 453.939 kb on + strand, within BACOVA_04514at 453.983 kb on + strand, within BACOVA_04514at 453.984 kb on - strand, within BACOVA_04514at 454.029 kb on + strand, within BACOVA_04514at 454.167 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.217 kb on + strand, within BACOVA_04514at 454.218 kb on - strand, within BACOVA_04514at 454.218 kb on - strand, within BACOVA_04514at 454.218 kb on - strand, within BACOVA_04514at 454.221 kb on + strand, within BACOVA_04514at 454.221 kb on + strand, within BACOVA_04514at 454.247 kb on - strand, within BACOVA_04514at 454.297 kb on + strand, within BACOVA_04514at 454.298 kb on - strand, within BACOVA_04514at 454.303 kb on + strand, within BACOVA_04514at 454.303 kb on + strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.304 kb on - strand, within BACOVA_04514at 454.324 kb on - strand, within BACOVA_04514at 454.362 kb on + strand, within BACOVA_04514at 454.362 kb on + strand, within BACOVA_04514at 454.424 kb on - strand, within BACOVA_04514at 454.459 kb on - strand, within BACOVA_04514at 454.471 kb on - strand, within BACOVA_04514at 454.547 kb on - strandat 454.547 kb on - strandat 454.569 kb on + strandat 454.637 kb on + strandat 454.761 kb on + strandat 454.761 kb on + strandat 454.774 kb on + strandat 454.793 kb on + strand, within BACOVA_04515at 454.843 kb on + strand, within BACOVA_04515at 454.979 kb on + strand, within BACOVA_04515at 454.980 kb on + strand, within BACOVA_04515at 454.980 kb on + strand, within BACOVA_04515at 454.999 kb on + strand, within BACOVA_04515at 455.090 kb on + strand, within BACOVA_04515at 455.095 kb on + strand, within BACOVA_04515at 455.096 kb on - strand, within BACOVA_04515at 455.098 kb on + strand, within BACOVA_04515at 455.099 kb on - strand, within BACOVA_04515at 455.134 kb on + strand, within BACOVA_04515at 455.198 kb on + strand, within BACOVA_04515at 455.198 kb on + strand, within BACOVA_04515at 455.199 kb on - strand, within BACOVA_04515at 455.269 kb on + strand, within BACOVA_04515at 455.292 kb on + strand, within BACOVA_04515at 455.297 kb on + strand, within BACOVA_04515at 455.297 kb on + strand, within BACOVA_04515at 455.309 kb on - strand, within BACOVA_04515at 455.309 kb on - strand, within BACOVA_04515at 455.310 kb on + strand, within BACOVA_04515at 455.311 kb on - strand, within BACOVA_04515at 455.343 kb on + strand, within BACOVA_04515at 455.343 kb on + strand, within BACOVA_04515at 455.343 kb on + strand, within BACOVA_04515at 455.344 kb on - strand, within BACOVA_04515at 455.344 kb on - strand, within BACOVA_04515at 455.345 kb on + strand, within BACOVA_04515at 455.374 kb on + strand, within BACOVA_04515at 455.377 kb on + strand, within BACOVA_04515at 455.378 kb on - strand, within BACOVA_04515at 455.382 kb on + strand, within BACOVA_04515at 455.383 kb on - strand, within BACOVA_04515at 455.384 kb on + strand, within BACOVA_04515at 455.385 kb on - strand, within BACOVA_04515at 455.385 kb on - strand, within BACOVA_04515at 455.413 kb on + strand, within BACOVA_04515at 455.477 kb on + strand, within BACOVA_04515at 455.487 kb on + strand, within BACOVA_04515at 455.488 kb on - strand, within BACOVA_04515at 455.597 kb on + strand, within BACOVA_04515at 455.598 kb on - strand, within BACOVA_04515at 455.599 kb on + strand, within BACOVA_04515at 455.616 kb on - strand, within BACOVA_04515at 455.621 kb on - strand, within BACOVA_04515at 455.651 kb on - strand, within BACOVA_04515at 455.663 kb on + strand, within BACOVA_04515at 455.663 kb on + strand, within BACOVA_04515at 455.663 kb on + strand, within BACOVA_04515

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
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452,358 - BACOVA_04513 0.25 -1.8
452,370 + BACOVA_04513 0.26 -0.5
452,391 - BACOVA_04513 0.28 -1.8
452,406 + BACOVA_04513 0.30 -0.3
452,504 + BACOVA_04513 0.39 -1.1
452,505 - BACOVA_04513 0.39 -0.0
452,505 - BACOVA_04513 0.39 -0.4
452,509 + BACOVA_04513 0.39 -0.5
452,509 + BACOVA_04513 0.39 -1.4
452,509 + BACOVA_04513 0.39 -2.1
452,509 + BACOVA_04513 0.39 -1.2
452,586 + BACOVA_04513 0.47 +2.0
452,586 + BACOVA_04513 0.47 -0.3
452,628 - BACOVA_04513 0.51 +0.4
452,640 - BACOVA_04513 0.52 -0.1
452,640 - BACOVA_04513 0.52 -0.7
452,687 + BACOVA_04513 0.56 -0.6
452,687 + BACOVA_04513 0.56 +0.3
452,687 + BACOVA_04513 0.56 +0.1
452,687 + BACOVA_04513 0.56 +0.3
452,688 - BACOVA_04513 0.56 -0.7
452,688 - BACOVA_04513 0.56 -2.5
452,688 - BACOVA_04513 0.56 -0.7
452,703 - BACOVA_04513 0.58 -3.4
452,703 - BACOVA_04513 0.58 +0.2
452,703 - BACOVA_04513 0.58 -0.7
452,706 + BACOVA_04513 0.58 +0.9
452,706 + BACOVA_04513 0.58 -0.0
452,706 + BACOVA_04513 0.58 +0.1
452,771 + BACOVA_04513 0.64 -0.0
452,826 + BACOVA_04513 0.69 -0.9
452,827 - BACOVA_04513 0.69 +0.6
452,827 - BACOVA_04513 0.69 -0.7
452,828 + BACOVA_04513 0.69 +0.6
452,843 - BACOVA_04513 0.71 +0.3
452,843 - BACOVA_04513 0.71 +0.7
452,843 - BACOVA_04513 0.71 -1.5
452,856 + BACOVA_04513 0.72 +0.4
452,895 + BACOVA_04513 0.76 -0.7
452,896 - BACOVA_04513 0.76 -1.7
452,896 - BACOVA_04513 0.76 +0.3
452,984 + BACOVA_04513 0.84 -0.5
452,985 - BACOVA_04513 0.84 -0.8
452,989 + BACOVA_04513 0.85 +0.5
452,990 - BACOVA_04513 0.85 -0.6
453,069 + -0.7
453,072 - +0.1
453,075 - +0.9
453,087 + +0.0
453,087 + +0.8
453,133 - -0.9
453,150 + +0.3
453,154 + -0.9
453,155 - -0.3
453,155 - -2.6
453,167 - -0.1
453,230 + +0.3
453,230 + +1.9
453,231 - -0.4
453,231 - -1.0
453,235 - -1.8
453,293 - +0.3
453,339 + -0.8
453,355 + -0.6
453,355 + +0.1
453,356 - -0.9
453,356 - -2.2
453,376 + +0.1
453,400 + +0.3
453,419 - -1.7
453,464 + -0.3
453,465 - -0.5
453,465 - -2.5
453,471 - -1.9
453,478 + BACOVA_04514 0.10 -0.3
453,479 - BACOVA_04514 0.10 -4.1
453,485 + BACOVA_04514 0.11 +1.1
453,490 + BACOVA_04514 0.11 -0.7
453,491 - BACOVA_04514 0.11 -0.5
453,493 + BACOVA_04514 0.11 -1.3
453,535 + BACOVA_04514 0.15 -0.0
453,557 - BACOVA_04514 0.16 -0.1
453,569 + BACOVA_04514 0.17 -0.3
453,592 - BACOVA_04514 0.19 -0.9
453,599 - BACOVA_04514 0.19 -0.9
453,599 - BACOVA_04514 0.19 +0.1
453,599 - BACOVA_04514 0.19 -0.3
453,606 + BACOVA_04514 0.20 +0.9
453,630 + BACOVA_04514 0.22 -1.3
453,652 + BACOVA_04514 0.23 -1.2
453,652 + BACOVA_04514 0.23 -0.3
453,653 - BACOVA_04514 0.23 -2.4
453,661 - BACOVA_04514 0.24 -0.6
453,675 + BACOVA_04514 0.25 -0.4
453,676 - BACOVA_04514 0.25 -1.8
453,692 - BACOVA_04514 0.26 +0.9
453,746 + BACOVA_04514 0.30 +0.1
453,757 + BACOVA_04514 0.31 -0.9
453,757 + BACOVA_04514 0.31 +0.8
453,757 + BACOVA_04514 0.31 -0.9
453,758 - BACOVA_04514 0.31 -0.6
453,758 - BACOVA_04514 0.31 -0.9
453,758 - BACOVA_04514 0.31 -0.8
453,760 - BACOVA_04514 0.32 -2.6
453,767 + BACOVA_04514 0.32 +0.3
453,771 - BACOVA_04514 0.32 +0.5
453,781 - BACOVA_04514 0.33 -2.5
453,939 + BACOVA_04514 0.45 +0.3
453,983 + BACOVA_04514 0.48 -0.1
453,984 - BACOVA_04514 0.48 -1.0
454,029 + BACOVA_04514 0.52 -0.2
454,167 + BACOVA_04514 0.62 -0.4
454,217 + BACOVA_04514 0.66 +0.3
454,217 + BACOVA_04514 0.66 +0.5
454,217 + BACOVA_04514 0.66 -0.6
454,217 + BACOVA_04514 0.66 -1.1
454,218 - BACOVA_04514 0.66 +0.7
454,218 - BACOVA_04514 0.66 -0.5
454,218 - BACOVA_04514 0.66 +0.5
454,221 + BACOVA_04514 0.66 -0.8
454,221 + BACOVA_04514 0.66 +0.5
454,247 - BACOVA_04514 0.68 -0.1
454,297 + BACOVA_04514 0.72 +0.5
454,298 - BACOVA_04514 0.72 +0.3
454,303 + BACOVA_04514 0.72 -0.0
454,303 + BACOVA_04514 0.72 -1.9
454,304 - BACOVA_04514 0.73 +0.9
454,304 - BACOVA_04514 0.73 -1.1
454,304 - BACOVA_04514 0.73 -0.4
454,304 - BACOVA_04514 0.73 +0.3
454,324 - BACOVA_04514 0.74 -0.3
454,362 + BACOVA_04514 0.77 +1.1
454,362 + BACOVA_04514 0.77 +1.4
454,424 - BACOVA_04514 0.82 +0.5
454,459 - BACOVA_04514 0.84 -0.1
454,471 - BACOVA_04514 0.85 -1.1
454,547 - -0.6
454,547 - -0.3
454,569 + +1.9
454,637 + -0.4
454,761 + -1.5
454,761 + +0.8
454,774 + +1.1
454,793 + BACOVA_04515 0.11 +0.5
454,843 + BACOVA_04515 0.15 -2.5
454,979 + BACOVA_04515 0.26 -0.5
454,980 + BACOVA_04515 0.26 +0.1
454,980 + BACOVA_04515 0.26 +1.8
454,999 + BACOVA_04515 0.28 -0.7
455,090 + BACOVA_04515 0.35 -0.6
455,095 + BACOVA_04515 0.36 -1.0
455,096 - BACOVA_04515 0.36 -2.4
455,098 + BACOVA_04515 0.36 +0.2
455,099 - BACOVA_04515 0.36 -0.2
455,134 + BACOVA_04515 0.39 -0.3
455,198 + BACOVA_04515 0.44 +0.0
455,198 + BACOVA_04515 0.44 -1.4
455,199 - BACOVA_04515 0.44 +0.1
455,269 + BACOVA_04515 0.50 +0.1
455,292 + BACOVA_04515 0.52 +0.5
455,297 + BACOVA_04515 0.52 -0.1
455,297 + BACOVA_04515 0.52 -0.4
455,309 - BACOVA_04515 0.53 -0.2
455,309 - BACOVA_04515 0.53 -1.3
455,310 + BACOVA_04515 0.54 +0.9
455,311 - BACOVA_04515 0.54 +0.8
455,343 + BACOVA_04515 0.56 -1.0
455,343 + BACOVA_04515 0.56 +1.3
455,343 + BACOVA_04515 0.56 -0.7
455,344 - BACOVA_04515 0.56 +0.3
455,344 - BACOVA_04515 0.56 -1.7
455,345 + BACOVA_04515 0.56 -0.1
455,374 + BACOVA_04515 0.59 -1.5
455,377 + BACOVA_04515 0.59 +0.1
455,378 - BACOVA_04515 0.59 -0.5
455,382 + BACOVA_04515 0.60 -0.4
455,383 - BACOVA_04515 0.60 +0.2
455,384 + BACOVA_04515 0.60 -0.7
455,385 - BACOVA_04515 0.60 +0.7
455,385 - BACOVA_04515 0.60 +0.1
455,413 + BACOVA_04515 0.62 -0.1
455,477 + BACOVA_04515 0.67 -0.4
455,487 + BACOVA_04515 0.68 +1.1
455,488 - BACOVA_04515 0.68 +0.5
455,597 + BACOVA_04515 0.77 -1.3
455,598 - BACOVA_04515 0.77 -0.1
455,599 + BACOVA_04515 0.78 -0.4
455,616 - BACOVA_04515 0.79 +0.0
455,621 - BACOVA_04515 0.79 -0.5
455,651 - BACOVA_04515 0.82 +0.3
455,663 + BACOVA_04515 0.83 -1.1
455,663 + BACOVA_04515 0.83 -0.8
455,663 + BACOVA_04515 0.83 +0.8

Or see this region's nucleotide sequence