Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04299

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04298 and BACOVA_04299 are separated by 169 nucleotidesBACOVA_04299 and BACOVA_04300 are separated by 177 nucleotidesBACOVA_04300 and BACOVA_04301 are separated by 5 nucleotides BACOVA_04298: BACOVA_04298 - oxidoreductase, 2-nitropropane dioxygenase family protein, at 190,614 to 191,552 _04298 BACOVA_04299: BACOVA_04299 - hypothetical protein, at 191,722 to 192,447 _04299 BACOVA_04300: BACOVA_04300 - hypothetical protein, at 192,625 to 193,155 _04300 BACOVA_04301: BACOVA_04301 - hypothetical protein, at 193,161 to 194,210 _04301 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 190.785 kb on + strand, within BACOVA_04298at 190.786 kb on - strand, within BACOVA_04298at 190.895 kb on + strand, within BACOVA_04298at 190.898 kb on + strand, within BACOVA_04298at 190.925 kb on - strand, within BACOVA_04298at 190.981 kb on - strand, within BACOVA_04298at 191.009 kb on + strand, within BACOVA_04298at 191.020 kb on - strand, within BACOVA_04298at 191.052 kb on + strand, within BACOVA_04298at 191.310 kb on - strand, within BACOVA_04298at 191.335 kb on + strand, within BACOVA_04298at 191.335 kb on + strand, within BACOVA_04298at 191.381 kb on + strand, within BACOVA_04298at 191.388 kb on - strand, within BACOVA_04298at 191.404 kb on - strand, within BACOVA_04298at 191.434 kb on - strand, within BACOVA_04298at 191.510 kb on + strandat 191.514 kb on - strandat 191.540 kb on + strandat 191.575 kb on + strandat 191.576 kb on - strandat 191.583 kb on + strandat 191.609 kb on + strandat 191.609 kb on + strandat 191.610 kb on - strandat 191.610 kb on - strandat 191.610 kb on - strandat 191.611 kb on + strandat 191.611 kb on + strandat 191.612 kb on - strandat 191.612 kb on - strandat 191.612 kb on - strandat 191.630 kb on - strandat 191.643 kb on + strandat 191.644 kb on - strandat 191.644 kb on - strandat 191.644 kb on - strandat 191.645 kb on + strandat 191.646 kb on - strandat 191.648 kb on + strandat 191.653 kb on - strandat 191.673 kb on + strandat 191.680 kb on + strandat 191.680 kb on + strandat 191.681 kb on - strandat 191.697 kb on - strandat 191.712 kb on + strandat 191.712 kb on + strandat 191.713 kb on - strandat 191.713 kb on - strandat 191.713 kb on - strandat 191.752 kb on + strandat 191.777 kb on + strandat 191.845 kb on - strand, within BACOVA_04299at 191.889 kb on + strand, within BACOVA_04299at 191.890 kb on - strand, within BACOVA_04299at 191.890 kb on - strand, within BACOVA_04299at 191.891 kb on + strand, within BACOVA_04299at 191.891 kb on + strand, within BACOVA_04299at 191.891 kb on + strand, within BACOVA_04299at 191.892 kb on - strand, within BACOVA_04299at 191.892 kb on - strand, within BACOVA_04299at 191.919 kb on + strand, within BACOVA_04299at 192.001 kb on + strand, within BACOVA_04299at 192.018 kb on + strand, within BACOVA_04299at 192.059 kb on + strand, within BACOVA_04299at 192.076 kb on + strand, within BACOVA_04299at 192.077 kb on - strand, within BACOVA_04299at 192.083 kb on + strand, within BACOVA_04299at 192.134 kb on + strand, within BACOVA_04299at 192.150 kb on + strand, within BACOVA_04299at 192.151 kb on - strand, within BACOVA_04299at 192.159 kb on + strand, within BACOVA_04299at 192.169 kb on - strand, within BACOVA_04299at 192.170 kb on + strand, within BACOVA_04299at 192.170 kb on + strand, within BACOVA_04299at 192.309 kb on + strand, within BACOVA_04299at 192.377 kb on - strandat 192.394 kb on + strandat 192.425 kb on - strandat 192.437 kb on - strandat 192.465 kb on + strandat 192.466 kb on - strandat 192.492 kb on - strandat 192.502 kb on + strandat 192.504 kb on + strandat 192.512 kb on + strandat 192.526 kb on - strandat 192.526 kb on - strandat 192.526 kb on - strandat 192.528 kb on + strandat 192.528 kb on + strandat 192.528 kb on + strandat 192.555 kb on - strandat 192.560 kb on + strandat 192.560 kb on + strandat 192.570 kb on + strandat 192.571 kb on - strandat 192.571 kb on - strandat 192.571 kb on - strandat 192.623 kb on + strandat 192.720 kb on + strand, within BACOVA_04300at 192.721 kb on - strand, within BACOVA_04300at 192.721 kb on - strand, within BACOVA_04300at 192.746 kb on - strand, within BACOVA_04300at 192.861 kb on + strand, within BACOVA_04300at 192.897 kb on + strand, within BACOVA_04300at 192.897 kb on + strand, within BACOVA_04300at 192.921 kb on + strand, within BACOVA_04300at 192.921 kb on + strand, within BACOVA_04300at 192.922 kb on - strand, within BACOVA_04300at 192.925 kb on - strand, within BACOVA_04300at 192.941 kb on + strand, within BACOVA_04300at 193.016 kb on + strand, within BACOVA_04300at 193.065 kb on + strand, within BACOVA_04300at 193.068 kb on - strand, within BACOVA_04300at 193.102 kb on + strand, within BACOVA_04300at 193.132 kb on + strandat 193.132 kb on + strandat 193.132 kb on + strandat 193.299 kb on - strand, within BACOVA_04301at 193.337 kb on + strand, within BACOVA_04301at 193.376 kb on + strand, within BACOVA_04301at 193.382 kb on + strand, within BACOVA_04301at 193.382 kb on + strand, within BACOVA_04301at 193.409 kb on - strand, within BACOVA_04301at 193.432 kb on - strand, within BACOVA_04301

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
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190,785 + BACOVA_04298 0.18 +0.1
190,786 - BACOVA_04298 0.18 +0.1
190,895 + BACOVA_04298 0.30 -0.4
190,898 + BACOVA_04298 0.30 -1.0
190,925 - BACOVA_04298 0.33 -1.3
190,981 - BACOVA_04298 0.39 +0.1
191,009 + BACOVA_04298 0.42 -0.8
191,020 - BACOVA_04298 0.43 +0.5
191,052 + BACOVA_04298 0.47 -1.2
191,310 - BACOVA_04298 0.74 +0.4
191,335 + BACOVA_04298 0.77 +0.8
191,335 + BACOVA_04298 0.77 +0.5
191,381 + BACOVA_04298 0.82 +0.4
191,388 - BACOVA_04298 0.82 +0.0
191,404 - BACOVA_04298 0.84 -1.6
191,434 - BACOVA_04298 0.87 -0.5
191,510 + -1.1
191,514 - -0.2
191,540 + +0.1
191,575 + -1.0
191,576 - -0.1
191,583 + -1.0
191,609 + -0.8
191,609 + +0.2
191,610 - +0.1
191,610 - +0.1
191,610 - +1.0
191,611 + -0.7
191,611 + +0.1
191,612 - -0.4
191,612 - +0.4
191,612 - -1.9
191,630 - +0.1
191,643 + +0.4
191,644 - +1.6
191,644 - -1.2
191,644 - +0.7
191,645 + -0.6
191,646 - +1.4
191,648 + +0.3
191,653 - +0.4
191,673 + +0.9
191,680 + -0.8
191,680 + -1.1
191,681 - +0.2
191,697 - +0.7
191,712 + -0.4
191,712 + +0.2
191,713 - -0.7
191,713 - +0.3
191,713 - -1.7
191,752 + -0.3
191,777 + -0.5
191,845 - BACOVA_04299 0.17 -0.7
191,889 + BACOVA_04299 0.23 +0.3
191,890 - BACOVA_04299 0.23 +0.1
191,890 - BACOVA_04299 0.23 +1.9
191,891 + BACOVA_04299 0.23 +0.2
191,891 + BACOVA_04299 0.23 -2.1
191,891 + BACOVA_04299 0.23 +1.0
191,892 - BACOVA_04299 0.23 +2.1
191,892 - BACOVA_04299 0.23 -0.8
191,919 + BACOVA_04299 0.27 +0.5
192,001 + BACOVA_04299 0.38 +1.3
192,018 + BACOVA_04299 0.41 -0.3
192,059 + BACOVA_04299 0.46 -0.0
192,076 + BACOVA_04299 0.49 +0.2
192,077 - BACOVA_04299 0.49 -0.4
192,083 + BACOVA_04299 0.50 -0.1
192,134 + BACOVA_04299 0.57 -0.8
192,150 + BACOVA_04299 0.59 -0.2
192,151 - BACOVA_04299 0.59 +0.3
192,159 + BACOVA_04299 0.60 -0.1
192,169 - BACOVA_04299 0.62 -0.8
192,170 + BACOVA_04299 0.62 -0.1
192,170 + BACOVA_04299 0.62 -0.4
192,309 + BACOVA_04299 0.81 +0.2
192,377 - +0.1
192,394 + -0.6
192,425 - -0.4
192,437 - -0.6
192,465 + +0.1
192,466 - +0.2
192,492 - +0.5
192,502 + +0.3
192,504 + -0.5
192,512 + +0.1
192,526 - +0.5
192,526 - -0.2
192,526 - +0.4
192,528 + -0.3
192,528 + -0.7
192,528 + -1.3
192,555 - +0.9
192,560 + -0.9
192,560 + +0.6
192,570 + +1.0
192,571 - -0.2
192,571 - +0.4
192,571 - -1.3
192,623 + -0.9
192,720 + BACOVA_04300 0.18 -0.7
192,721 - BACOVA_04300 0.18 +0.2
192,721 - BACOVA_04300 0.18 +0.3
192,746 - BACOVA_04300 0.23 -0.7
192,861 + BACOVA_04300 0.44 -0.7
192,897 + BACOVA_04300 0.51 -1.8
192,897 + BACOVA_04300 0.51 +0.9
192,921 + BACOVA_04300 0.56 +0.7
192,921 + BACOVA_04300 0.56 +0.2
192,922 - BACOVA_04300 0.56 -0.2
192,925 - BACOVA_04300 0.56 -0.4
192,941 + BACOVA_04300 0.60 -0.6
193,016 + BACOVA_04300 0.74 +1.2
193,065 + BACOVA_04300 0.83 +0.2
193,068 - BACOVA_04300 0.83 +0.8
193,102 + BACOVA_04300 0.90 +0.5
193,132 + +0.4
193,132 + +0.2
193,132 + -0.1
193,299 - BACOVA_04301 0.13 -1.0
193,337 + BACOVA_04301 0.17 +1.1
193,376 + BACOVA_04301 0.20 +0.7
193,382 + BACOVA_04301 0.21 +0.9
193,382 + BACOVA_04301 0.21 +0.8
193,409 - BACOVA_04301 0.24 -0.5
193,432 - BACOVA_04301 0.26 +0.4

Or see this region's nucleotide sequence