Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03839 and BACOVA_03840 overlap by 11 nucleotides BACOVA_03840 and BACOVA_03841 are separated by 354 nucleotides BACOVA_03841 and BACOVA_03842 are separated by 29 nucleotides BACOVA_03842 and BACOVA_03843 are separated by 160 nucleotides
BACOVA_03839: BACOVA_03839 - inner membrane protein CreD, at 187,990 to 189,342
_03839
BACOVA_03840: BACOVA_03840 - hypothetical protein, at 189,332 to 189,445
_03840
BACOVA_03841: BACOVA_03841 - acetyltransferase, GNAT family, at 189,800 to 190,243
_03841
BACOVA_03842: BACOVA_03842 - transcriptional regulator, HxlR family, at 190,273 to 190,623
_03842
BACOVA_03843: BACOVA_03843 - DJ-1/PfpI family protein, at 190,784 to 191,317
_03843
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.807 kb on + strand, within BACOVA_03839 at 188.824 kb on + strand, within BACOVA_03839 at 188.846 kb on - strand, within BACOVA_03839 at 188.918 kb on - strand, within BACOVA_03839 at 188.963 kb on + strand, within BACOVA_03839 at 189.029 kb on - strand, within BACOVA_03839 at 189.032 kb on + strand, within BACOVA_03839 at 189.032 kb on + strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.061 kb on + strand, within BACOVA_03839 at 189.062 kb on - strand, within BACOVA_03839 at 189.062 kb on - strand, within BACOVA_03839 at 189.117 kb on - strand, within BACOVA_03839 at 189.132 kb on + strand, within BACOVA_03839 at 189.132 kb on + strand, within BACOVA_03839 at 189.133 kb on - strand, within BACOVA_03839 at 189.135 kb on + strand, within BACOVA_03839 at 189.136 kb on - strand, within BACOVA_03839 at 189.138 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.188 kb on + strand, within BACOVA_03839 at 189.189 kb on - strand, within BACOVA_03839 at 189.210 kb on + strand at 189.211 kb on - strand at 189.219 kb on + strand at 189.220 kb on - strand at 189.223 kb on + strand at 189.223 kb on + strand at 189.275 kb on + strand at 189.276 kb on - strand at 189.300 kb on - strand at 189.300 kb on - strand at 189.307 kb on + strand at 189.323 kb on + strand at 189.324 kb on - strand at 189.411 kb on - strand, within BACOVA_03840 at 189.457 kb on - strand at 189.472 kb on - strand at 189.477 kb on + strand at 189.480 kb on + strand at 189.480 kb on + strand at 189.481 kb on - strand at 189.481 kb on - strand at 189.486 kb on + strand at 189.488 kb on + strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.494 kb on - strand at 189.579 kb on - strand at 189.610 kb on + strand at 189.610 kb on + strand at 189.610 kb on + strand at 189.628 kb on - strand at 189.643 kb on + strand at 189.643 kb on + strand at 189.649 kb on + strand at 189.668 kb on - strand at 189.697 kb on + strand at 189.698 kb on - strand at 189.698 kb on - strand at 189.702 kb on + strand at 189.711 kb on - strand at 189.713 kb on - strand at 189.716 kb on + strand at 189.732 kb on - strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.820 kb on - strand at 189.820 kb on - strand at 189.821 kb on + strand at 189.821 kb on + strand at 189.822 kb on - strand at 189.827 kb on - strand at 189.853 kb on - strand, within BACOVA_03841 at 189.868 kb on - strand, within BACOVA_03841 at 189.868 kb on - strand, within BACOVA_03841 at 189.945 kb on - strand, within BACOVA_03841 at 189.956 kb on - strand, within BACOVA_03841 at 189.988 kb on - strand, within BACOVA_03841 at 189.991 kb on - strand, within BACOVA_03841 at 190.057 kb on + strand, within BACOVA_03841 at 190.057 kb on + strand, within BACOVA_03841 at 190.071 kb on + strand, within BACOVA_03841 at 190.075 kb on + strand, within BACOVA_03841 at 190.097 kb on + strand, within BACOVA_03841 at 190.126 kb on - strand, within BACOVA_03841 at 190.194 kb on - strand, within BACOVA_03841 at 190.235 kb on + strand at 190.244 kb on - strand at 190.305 kb on + strand at 190.312 kb on - strand, within BACOVA_03842 at 190.344 kb on + strand, within BACOVA_03842 at 190.382 kb on + strand, within BACOVA_03842 at 190.383 kb on - strand, within BACOVA_03842 at 190.411 kb on + strand, within BACOVA_03842 at 190.446 kb on + strand, within BACOVA_03842 at 190.446 kb on + strand, within BACOVA_03842 at 190.456 kb on + strand, within BACOVA_03842 at 190.486 kb on + strand, within BACOVA_03842 at 190.500 kb on + strand, within BACOVA_03842 at 190.501 kb on - strand, within BACOVA_03842 at 190.536 kb on + strand, within BACOVA_03842 at 190.539 kb on + strand, within BACOVA_03842 at 190.539 kb on + strand, within BACOVA_03842 at 190.540 kb on - strand, within BACOVA_03842 at 190.540 kb on - strand, within BACOVA_03842 at 190.664 kb on - strand at 190.674 kb on - strand at 190.693 kb on - strand at 190.784 kb on - strand at 190.843 kb on - strand, within BACOVA_03843 at 190.851 kb on - strand, within BACOVA_03843 at 190.885 kb on + strand, within BACOVA_03843 at 190.885 kb on + strand, within BACOVA_03843 at 190.919 kb on - strand, within BACOVA_03843 at 190.964 kb on - strand, within BACOVA_03843 at 191.022 kb on + strand, within BACOVA_03843 at 191.029 kb on - strand, within BACOVA_03843 at 191.029 kb on - strand, within BACOVA_03843 at 191.055 kb on - strand, within BACOVA_03843 at 191.061 kb on + strand, within BACOVA_03843 at 191.061 kb on + strand, within BACOVA_03843 at 191.173 kb on - strand, within BACOVA_03843 at 191.191 kb on + strand, within BACOVA_03843 at 191.218 kb on + strand, within BACOVA_03843 at 191.225 kb on - strand, within BACOVA_03843 at 191.238 kb on + strand, within BACOVA_03843 at 191.239 kb on - strand, within BACOVA_03843
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 188,807 + BACOVA_03839 0.60 +1.7 188,824 + BACOVA_03839 0.62 +0.9 188,846 - BACOVA_03839 0.63 +0.3 188,918 - BACOVA_03839 0.69 +1.2 188,963 + BACOVA_03839 0.72 -0.5 189,029 - BACOVA_03839 0.77 -0.5 189,032 + BACOVA_03839 0.77 -0.2 189,032 + BACOVA_03839 0.77 -0.7 189,039 - BACOVA_03839 0.78 -0.0 189,039 - BACOVA_03839 0.78 -0.4 189,039 - BACOVA_03839 0.78 +0.6 189,061 + BACOVA_03839 0.79 -0.1 189,062 - BACOVA_03839 0.79 -0.1 189,062 - BACOVA_03839 0.79 +0.3 189,117 - BACOVA_03839 0.83 -0.5 189,132 + BACOVA_03839 0.84 +0.9 189,132 + BACOVA_03839 0.84 +0.3 189,133 - BACOVA_03839 0.84 +0.7 189,135 + BACOVA_03839 0.85 +0.7 189,136 - BACOVA_03839 0.85 -0.3 189,138 - BACOVA_03839 0.85 +0.3 189,154 - BACOVA_03839 0.86 +0.6 189,154 - BACOVA_03839 0.86 +0.7 189,154 - BACOVA_03839 0.86 -0.4 189,188 + BACOVA_03839 0.89 +0.2 189,189 - BACOVA_03839 0.89 +0.3 189,210 + +0.2 189,211 - -1.8 189,219 + +0.2 189,220 - -0.1 189,223 + +0.5 189,223 + -0.2 189,275 + -0.0 189,276 - +0.1 189,300 - -1.1 189,300 - -1.0 189,307 + -0.6 189,323 + +1.5 189,324 - -0.5 189,411 - BACOVA_03840 0.69 -0.4 189,457 - +1.7 189,472 - -0.1 189,477 + +0.9 189,480 + -1.5 189,480 + +0.5 189,481 - -1.5 189,481 - -1.6 189,486 + +1.5 189,488 + +0.3 189,489 - -0.9 189,489 - +0.3 189,489 - -0.8 189,489 - -0.5 189,494 - +0.0 189,579 - -0.3 189,610 + +0.4 189,610 + +0.2 189,610 + -1.5 189,628 - -0.6 189,643 + +0.9 189,643 + -1.5 189,649 + +1.3 189,668 - -0.5 189,697 + +0.5 189,698 - -0.1 189,698 - +0.6 189,702 + -0.1 189,711 - +0.1 189,713 - +0.2 189,716 + +0.3 189,732 - -0.5 189,819 + +0.4 189,819 + +0.2 189,819 + +0.4 189,819 + +0.8 189,820 - +0.1 189,820 - -0.3 189,821 + -1.5 189,821 + -0.9 189,822 - -0.7 189,827 - +0.5 189,853 - BACOVA_03841 0.12 -0.3 189,868 - BACOVA_03841 0.15 +0.2 189,868 - BACOVA_03841 0.15 +0.3 189,945 - BACOVA_03841 0.33 +0.2 189,956 - BACOVA_03841 0.35 -0.2 189,988 - BACOVA_03841 0.42 +0.6 189,991 - BACOVA_03841 0.43 -0.2 190,057 + BACOVA_03841 0.58 +0.7 190,057 + BACOVA_03841 0.58 +0.6 190,071 + BACOVA_03841 0.61 -1.0 190,075 + BACOVA_03841 0.62 +0.6 190,097 + BACOVA_03841 0.67 -0.2 190,126 - BACOVA_03841 0.73 -0.2 190,194 - BACOVA_03841 0.89 -1.5 190,235 + +1.4 190,244 - +0.6 190,305 + -0.1 190,312 - BACOVA_03842 0.11 -0.1 190,344 + BACOVA_03842 0.20 +0.4 190,382 + BACOVA_03842 0.31 +0.2 190,383 - BACOVA_03842 0.31 -2.1 190,411 + BACOVA_03842 0.39 -0.1 190,446 + BACOVA_03842 0.49 +0.5 190,446 + BACOVA_03842 0.49 -0.7 190,456 + BACOVA_03842 0.52 +0.8 190,486 + BACOVA_03842 0.61 -1.0 190,500 + BACOVA_03842 0.65 -0.4 190,501 - BACOVA_03842 0.65 +2.1 190,536 + BACOVA_03842 0.75 -2.2 190,539 + BACOVA_03842 0.76 -0.4 190,539 + BACOVA_03842 0.76 -0.3 190,540 - BACOVA_03842 0.76 +1.3 190,540 - BACOVA_03842 0.76 -0.6 190,664 - -0.0 190,674 - -0.1 190,693 - -0.5 190,784 - -0.5 190,843 - BACOVA_03843 0.11 +0.6 190,851 - BACOVA_03843 0.13 -0.8 190,885 + BACOVA_03843 0.19 +0.6 190,885 + BACOVA_03843 0.19 -0.1 190,919 - BACOVA_03843 0.25 -0.5 190,964 - BACOVA_03843 0.34 -0.2 191,022 + BACOVA_03843 0.45 -1.3 191,029 - BACOVA_03843 0.46 -1.3 191,029 - BACOVA_03843 0.46 -1.7 191,055 - BACOVA_03843 0.51 +0.3 191,061 + BACOVA_03843 0.52 -0.3 191,061 + BACOVA_03843 0.52 +0.9 191,173 - BACOVA_03843 0.73 +0.3 191,191 + BACOVA_03843 0.76 +0.4 191,218 + BACOVA_03843 0.81 +0.2 191,225 - BACOVA_03843 0.83 +0.2 191,238 + BACOVA_03843 0.85 -0.1 191,239 - BACOVA_03843 0.85 -0.7
Or see this region's nucleotide sequence