Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03820

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03818 and BACOVA_03819 are separated by 80 nucleotidesBACOVA_03819 and BACOVA_03820 are separated by 18 nucleotidesBACOVA_03820 and BACOVA_03821 are separated by 196 nucleotides BACOVA_03818: BACOVA_03818 - cation diffusion facilitator family transporter, at 164,782 to 165,684 _03818 BACOVA_03819: BACOVA_03819 - thioesterase family protein, at 165,765 to 166,145 _03819 BACOVA_03820: BACOVA_03820 - hypothetical protein, at 166,164 to 167,045 _03820 BACOVA_03821: BACOVA_03821 - hypothetical protein, at 167,242 to 168,138 _03821 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1 2at 165.165 kb on + strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.222 kb on - strand, within BACOVA_03818at 165.246 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.358 kb on + strand, within BACOVA_03818at 165.375 kb on + strand, within BACOVA_03818at 165.400 kb on - strand, within BACOVA_03818at 165.409 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.430 kb on - strand, within BACOVA_03818at 165.438 kb on + strand, within BACOVA_03818at 165.446 kb on + strand, within BACOVA_03818at 165.460 kb on - strand, within BACOVA_03818at 165.503 kb on - strand, within BACOVA_03818at 165.514 kb on + strand, within BACOVA_03818at 165.547 kb on + strand, within BACOVA_03818at 165.564 kb on - strand, within BACOVA_03818at 165.586 kb on + strand, within BACOVA_03818at 165.602 kb on - strandat 165.619 kb on + strandat 165.624 kb on + strandat 165.657 kb on + strandat 165.689 kb on + strandat 165.697 kb on + strandat 165.697 kb on + strandat 165.698 kb on - strandat 165.698 kb on - strandat 165.702 kb on + strandat 165.711 kb on + strandat 165.736 kb on + strandat 165.812 kb on - strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.819 kb on - strand, within BACOVA_03819at 165.858 kb on + strand, within BACOVA_03819at 165.874 kb on - strand, within BACOVA_03819at 165.909 kb on + strand, within BACOVA_03819at 165.951 kb on - strand, within BACOVA_03819at 165.977 kb on + strand, within BACOVA_03819at 165.978 kb on - strand, within BACOVA_03819at 166.120 kb on - strandat 166.122 kb on - strandat 166.146 kb on - strandat 166.159 kb on - strandat 166.160 kb on + strandat 166.170 kb on - strandat 166.170 kb on - strandat 166.175 kb on + strandat 166.241 kb on + strandat 166.241 kb on + strandat 166.242 kb on - strandat 166.256 kb on + strand, within BACOVA_03820at 166.256 kb on + strand, within BACOVA_03820at 166.256 kb on + strand, within BACOVA_03820at 166.257 kb on - strand, within BACOVA_03820at 166.259 kb on - strand, within BACOVA_03820at 166.292 kb on + strand, within BACOVA_03820at 166.308 kb on + strand, within BACOVA_03820at 166.314 kb on + strand, within BACOVA_03820at 166.332 kb on + strand, within BACOVA_03820at 166.332 kb on + strand, within BACOVA_03820at 166.336 kb on - strand, within BACOVA_03820at 166.341 kb on - strand, within BACOVA_03820at 166.435 kb on - strand, within BACOVA_03820at 166.498 kb on + strand, within BACOVA_03820at 166.547 kb on + strand, within BACOVA_03820at 166.570 kb on - strand, within BACOVA_03820at 166.583 kb on + strand, within BACOVA_03820at 166.613 kb on - strand, within BACOVA_03820at 166.617 kb on - strand, within BACOVA_03820at 166.640 kb on + strand, within BACOVA_03820at 166.652 kb on - strand, within BACOVA_03820at 166.757 kb on - strand, within BACOVA_03820at 166.768 kb on + strand, within BACOVA_03820at 166.768 kb on + strand, within BACOVA_03820at 166.769 kb on - strand, within BACOVA_03820at 166.771 kb on + strand, within BACOVA_03820at 166.772 kb on - strand, within BACOVA_03820at 166.777 kb on + strand, within BACOVA_03820at 166.777 kb on + strand, within BACOVA_03820at 166.777 kb on + strand, within BACOVA_03820at 166.778 kb on - strand, within BACOVA_03820at 166.809 kb on + strand, within BACOVA_03820at 166.810 kb on - strand, within BACOVA_03820at 166.845 kb on - strand, within BACOVA_03820at 166.979 kb on + strandat 166.980 kb on - strandat 166.980 kb on - strandat 166.986 kb on + strandat 166.987 kb on - strandat 167.107 kb on - strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.127 kb on + strandat 167.128 kb on - strandat 167.132 kb on - strandat 167.133 kb on + strandat 167.137 kb on + strandat 167.138 kb on - strandat 167.181 kb on + strandat 167.182 kb on - strandat 167.182 kb on - strandat 167.183 kb on + strandat 167.184 kb on - strandat 167.185 kb on + strandat 167.186 kb on - strandat 167.186 kb on - strandat 167.282 kb on + strandat 167.283 kb on - strandat 167.295 kb on + strandat 167.351 kb on + strand, within BACOVA_03821at 167.362 kb on + strand, within BACOVA_03821at 167.364 kb on + strand, within BACOVA_03821at 167.365 kb on - strand, within BACOVA_03821at 167.391 kb on + strand, within BACOVA_03821at 167.404 kb on + strand, within BACOVA_03821at 167.405 kb on - strand, within BACOVA_03821at 167.472 kb on + strand, within BACOVA_03821at 167.473 kb on - strand, within BACOVA_03821at 167.521 kb on - strand, within BACOVA_03821at 167.523 kb on + strand, within BACOVA_03821at 167.584 kb on + strand, within BACOVA_03821at 167.597 kb on + strand, within BACOVA_03821at 167.597 kb on + strand, within BACOVA_03821at 167.598 kb on - strand, within BACOVA_03821at 167.605 kb on - strand, within BACOVA_03821at 167.609 kb on + strand, within BACOVA_03821at 167.609 kb on + strand, within BACOVA_03821at 167.610 kb on - strand, within BACOVA_03821at 167.610 kb on - strand, within BACOVA_03821at 167.619 kb on + strand, within BACOVA_03821at 167.619 kb on + strand, within BACOVA_03821at 167.649 kb on + strand, within BACOVA_03821at 167.658 kb on - strand, within BACOVA_03821at 167.687 kb on + strand, within BACOVA_03821at 167.687 kb on + strand, within BACOVA_03821at 167.710 kb on + strand, within BACOVA_03821at 167.713 kb on + strand, within BACOVA_03821at 167.718 kb on - strand, within BACOVA_03821at 167.725 kb on - strand, within BACOVA_03821at 167.728 kb on + strand, within BACOVA_03821at 167.729 kb on - strand, within BACOVA_03821at 167.730 kb on + strand, within BACOVA_03821at 167.742 kb on + strand, within BACOVA_03821at 167.743 kb on + strand, within BACOVA_03821at 167.747 kb on + strand, within BACOVA_03821at 167.748 kb on - strand, within BACOVA_03821at 167.832 kb on + strand, within BACOVA_03821at 167.837 kb on + strand, within BACOVA_03821at 167.838 kb on - strand, within BACOVA_03821at 167.844 kb on + strand, within BACOVA_03821at 167.913 kb on - strand, within BACOVA_03821at 167.913 kb on - strand, within BACOVA_03821at 167.923 kb on - strand, within BACOVA_03821at 167.937 kb on + strand, within BACOVA_03821at 167.938 kb on - strand, within BACOVA_03821at 168.027 kb on + strand, within BACOVA_03821at 168.033 kb on + strand, within BACOVA_03821at 168.034 kb on - strand, within BACOVA_03821at 168.034 kb on - strand, within BACOVA_03821

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
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165,165 + BACOVA_03818 0.42 +1.1
165,202 - BACOVA_03818 0.47 -1.6
165,202 - BACOVA_03818 0.47 +0.6
165,222 - BACOVA_03818 0.49 -0.5
165,246 + BACOVA_03818 0.51 +0.5
165,349 + BACOVA_03818 0.63 +1.9
165,349 + BACOVA_03818 0.63 -0.2
165,358 + BACOVA_03818 0.64 -0.1
165,375 + BACOVA_03818 0.66 -0.0
165,400 - BACOVA_03818 0.68 +0.3
165,409 + BACOVA_03818 0.69 +1.0
165,429 + BACOVA_03818 0.72 +0.5
165,429 + BACOVA_03818 0.72 -0.2
165,429 + BACOVA_03818 0.72 -0.8
165,430 - BACOVA_03818 0.72 +0.5
165,438 + BACOVA_03818 0.73 +0.2
165,446 + BACOVA_03818 0.74 +0.4
165,460 - BACOVA_03818 0.75 -0.7
165,503 - BACOVA_03818 0.80 +0.5
165,514 + BACOVA_03818 0.81 +0.1
165,547 + BACOVA_03818 0.85 -0.5
165,564 - BACOVA_03818 0.87 -0.7
165,586 + BACOVA_03818 0.89 -0.7
165,602 - +0.6
165,619 + +0.9
165,624 + -0.0
165,657 + +0.2
165,689 + -1.3
165,697 + -1.3
165,697 + +0.5
165,698 - -0.7
165,698 - -1.4
165,702 + -0.1
165,711 + +0.4
165,736 + +0.3
165,812 - BACOVA_03819 0.12 -0.5
165,816 + BACOVA_03819 0.13 +0.3
165,816 + BACOVA_03819 0.13 -0.5
165,816 + BACOVA_03819 0.13 -0.0
165,817 - BACOVA_03819 0.14 -0.5
165,817 - BACOVA_03819 0.14 -0.2
165,817 - BACOVA_03819 0.14 +0.0
165,819 - BACOVA_03819 0.14 -0.0
165,858 + BACOVA_03819 0.24 -0.0
165,874 - BACOVA_03819 0.29 +0.0
165,909 + BACOVA_03819 0.38 -0.2
165,951 - BACOVA_03819 0.49 -1.1
165,977 + BACOVA_03819 0.56 -1.9
165,978 - BACOVA_03819 0.56 -0.4
166,120 - -2.5
166,122 - -0.1
166,146 - -0.5
166,159 - +0.5
166,160 + -0.4
166,170 - +0.5
166,170 - +0.6
166,175 + +0.3
166,241 + +0.7
166,241 + +0.1
166,242 - +1.4
166,256 + BACOVA_03820 0.10 +0.1
166,256 + BACOVA_03820 0.10 -2.1
166,256 + BACOVA_03820 0.10 +0.2
166,257 - BACOVA_03820 0.11 -0.1
166,259 - BACOVA_03820 0.11 -0.5
166,292 + BACOVA_03820 0.15 +0.6
166,308 + BACOVA_03820 0.16 -1.0
166,314 + BACOVA_03820 0.17 -0.1
166,332 + BACOVA_03820 0.19 -0.5
166,332 + BACOVA_03820 0.19 +1.6
166,336 - BACOVA_03820 0.20 +0.4
166,341 - BACOVA_03820 0.20 +0.9
166,435 - BACOVA_03820 0.31 -0.4
166,498 + BACOVA_03820 0.38 -0.8
166,547 + BACOVA_03820 0.43 +0.4
166,570 - BACOVA_03820 0.46 -0.1
166,583 + BACOVA_03820 0.48 +0.5
166,613 - BACOVA_03820 0.51 -0.5
166,617 - BACOVA_03820 0.51 +0.7
166,640 + BACOVA_03820 0.54 -0.5
166,652 - BACOVA_03820 0.55 +0.5
166,757 - BACOVA_03820 0.67 +0.5
166,768 + BACOVA_03820 0.68 -0.1
166,768 + BACOVA_03820 0.68 -0.1
166,769 - BACOVA_03820 0.69 -0.8
166,771 + BACOVA_03820 0.69 +0.3
166,772 - BACOVA_03820 0.69 +0.3
166,777 + BACOVA_03820 0.70 -0.2
166,777 + BACOVA_03820 0.70 -1.3
166,777 + BACOVA_03820 0.70 -0.7
166,778 - BACOVA_03820 0.70 +0.3
166,809 + BACOVA_03820 0.73 +0.2
166,810 - BACOVA_03820 0.73 -0.8
166,845 - BACOVA_03820 0.77 +1.3
166,979 + -0.2
166,980 - +0.1
166,980 - +0.6
166,986 + -0.7
166,987 - -0.6
167,107 - +0.5
167,127 + -1.6
167,127 + +0.5
167,127 + -0.6
167,127 + -0.1
167,127 + -1.1
167,127 + -0.5
167,128 - -1.1
167,132 - -0.4
167,133 + -0.6
167,137 + +0.1
167,138 - -1.4
167,181 + -0.0
167,182 - -1.8
167,182 - +1.1
167,183 + +1.1
167,184 - -0.9
167,185 + -1.3
167,186 - +0.3
167,186 - -1.2
167,282 + -0.7
167,283 - +1.1
167,295 + -0.5
167,351 + BACOVA_03821 0.12 +0.2
167,362 + BACOVA_03821 0.13 -0.2
167,364 + BACOVA_03821 0.14 -0.1
167,365 - BACOVA_03821 0.14 -0.3
167,391 + BACOVA_03821 0.17 +0.2
167,404 + BACOVA_03821 0.18 +0.2
167,405 - BACOVA_03821 0.18 +0.8
167,472 + BACOVA_03821 0.26 -0.3
167,473 - BACOVA_03821 0.26 -1.4
167,521 - BACOVA_03821 0.31 +0.4
167,523 + BACOVA_03821 0.31 -0.1
167,584 + BACOVA_03821 0.38 -0.4
167,597 + BACOVA_03821 0.40 -0.2
167,597 + BACOVA_03821 0.40 -0.0
167,598 - BACOVA_03821 0.40 -0.8
167,605 - BACOVA_03821 0.40 -1.3
167,609 + BACOVA_03821 0.41 -1.6
167,609 + BACOVA_03821 0.41 -0.4
167,610 - BACOVA_03821 0.41 +0.7
167,610 - BACOVA_03821 0.41 -0.7
167,619 + BACOVA_03821 0.42 +1.1
167,619 + BACOVA_03821 0.42 -0.4
167,649 + BACOVA_03821 0.45 -1.4
167,658 - BACOVA_03821 0.46 -0.6
167,687 + BACOVA_03821 0.50 -1.1
167,687 + BACOVA_03821 0.50 +1.0
167,710 + BACOVA_03821 0.52 -1.1
167,713 + BACOVA_03821 0.53 +0.5
167,718 - BACOVA_03821 0.53 +0.3
167,725 - BACOVA_03821 0.54 -1.0
167,728 + BACOVA_03821 0.54 -0.9
167,729 - BACOVA_03821 0.54 +0.2
167,730 + BACOVA_03821 0.54 +0.5
167,742 + BACOVA_03821 0.56 +0.2
167,743 + BACOVA_03821 0.56 -0.4
167,747 + BACOVA_03821 0.56 +0.7
167,748 - BACOVA_03821 0.56 +0.1
167,832 + BACOVA_03821 0.66 +1.0
167,837 + BACOVA_03821 0.66 -0.3
167,838 - BACOVA_03821 0.66 -1.2
167,844 + BACOVA_03821 0.67 -0.7
167,913 - BACOVA_03821 0.75 -0.8
167,913 - BACOVA_03821 0.75 -0.3
167,923 - BACOVA_03821 0.76 +1.5
167,937 + BACOVA_03821 0.77 +0.3
167,938 - BACOVA_03821 0.78 -0.5
168,027 + BACOVA_03821 0.88 -0.3
168,033 + BACOVA_03821 0.88 -0.3
168,034 - BACOVA_03821 0.88 -0.4
168,034 - BACOVA_03821 0.88 -0.5

Or see this region's nucleotide sequence