Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03501 and BACOVA_03502 are separated by 146 nucleotides BACOVA_03502 and BACOVA_03503 are separated by 144 nucleotides BACOVA_03503 and BACOVA_03504 are separated by 33 nucleotides
BACOVA_03501: BACOVA_03501 - glycosyltransferase, group 2 family protein, at 258,840 to 259,829
_03501
BACOVA_03502: BACOVA_03502 - glycosyl hydrolase family 20, catalytic domain protein, at 259,976 to 261,991
_03502
BACOVA_03503: BACOVA_03503 - DNA repair protein RadC, at 262,136 to 262,831
_03503
BACOVA_03504: BACOVA_03504 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 262,865 to 266,800
_03504
Position (kb) 259
260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.827 kb on + strand at 259.847 kb on + strand at 259.850 kb on + strand at 259.850 kb on + strand at 259.851 kb on - strand at 259.902 kb on + strand at 259.902 kb on + strand at 259.931 kb on + strand at 259.932 kb on - strand at 259.934 kb on - strand at 259.934 kb on - strand at 259.953 kb on - strand at 259.979 kb on + strand at 259.984 kb on + strand at 259.985 kb on - strand at 259.985 kb on - strand at 259.985 kb on - strand at 260.025 kb on - strand at 260.078 kb on - strand at 260.127 kb on + strand at 260.245 kb on - strand, within BACOVA_03502 at 260.245 kb on - strand, within BACOVA_03502 at 260.395 kb on - strand, within BACOVA_03502 at 260.395 kb on - strand, within BACOVA_03502 at 260.416 kb on + strand, within BACOVA_03502 at 260.422 kb on + strand, within BACOVA_03502 at 260.423 kb on - strand, within BACOVA_03502 at 260.489 kb on + strand, within BACOVA_03502 at 260.490 kb on - strand, within BACOVA_03502 at 260.490 kb on - strand, within BACOVA_03502 at 260.561 kb on + strand, within BACOVA_03502 at 260.627 kb on + strand, within BACOVA_03502 at 260.627 kb on + strand, within BACOVA_03502 at 260.627 kb on + strand, within BACOVA_03502 at 260.629 kb on + strand, within BACOVA_03502 at 260.629 kb on + strand, within BACOVA_03502 at 260.633 kb on + strand, within BACOVA_03502 at 260.634 kb on - strand, within BACOVA_03502 at 260.634 kb on - strand, within BACOVA_03502 at 260.757 kb on + strand, within BACOVA_03502 at 260.757 kb on + strand, within BACOVA_03502 at 260.758 kb on - strand, within BACOVA_03502 at 260.759 kb on + strand, within BACOVA_03502 at 260.783 kb on - strand, within BACOVA_03502 at 260.791 kb on - strand, within BACOVA_03502 at 260.813 kb on + strand, within BACOVA_03502 at 260.830 kb on + strand, within BACOVA_03502 at 260.831 kb on - strand, within BACOVA_03502 at 260.833 kb on + strand, within BACOVA_03502 at 260.874 kb on - strand, within BACOVA_03502 at 260.874 kb on - strand, within BACOVA_03502 at 260.881 kb on + strand, within BACOVA_03502 at 260.884 kb on - strand, within BACOVA_03502 at 260.918 kb on + strand, within BACOVA_03502 at 260.958 kb on - strand, within BACOVA_03502 at 260.987 kb on - strand, within BACOVA_03502 at 260.989 kb on - strand, within BACOVA_03502 at 260.997 kb on + strand, within BACOVA_03502 at 260.998 kb on - strand, within BACOVA_03502 at 261.000 kb on + strand, within BACOVA_03502 at 261.000 kb on + strand, within BACOVA_03502 at 261.000 kb on + strand, within BACOVA_03502 at 261.001 kb on - strand, within BACOVA_03502 at 261.042 kb on + strand, within BACOVA_03502 at 261.042 kb on + strand, within BACOVA_03502 at 261.062 kb on + strand, within BACOVA_03502 at 261.063 kb on - strand, within BACOVA_03502 at 261.080 kb on + strand, within BACOVA_03502 at 261.102 kb on + strand, within BACOVA_03502 at 261.132 kb on + strand, within BACOVA_03502 at 261.166 kb on + strand, within BACOVA_03502 at 261.166 kb on + strand, within BACOVA_03502 at 261.167 kb on - strand, within BACOVA_03502 at 261.171 kb on + strand, within BACOVA_03502 at 261.172 kb on - strand, within BACOVA_03502 at 261.254 kb on - strand, within BACOVA_03502 at 261.310 kb on - strand, within BACOVA_03502 at 261.310 kb on - strand, within BACOVA_03502 at 261.370 kb on - strand, within BACOVA_03502 at 261.412 kb on + strand, within BACOVA_03502 at 261.425 kb on + strand, within BACOVA_03502 at 261.447 kb on + strand, within BACOVA_03502 at 261.465 kb on - strand, within BACOVA_03502 at 261.480 kb on + strand, within BACOVA_03502 at 261.534 kb on + strand, within BACOVA_03502 at 261.535 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.650 kb on + strand, within BACOVA_03502 at 261.650 kb on + strand, within BACOVA_03502 at 261.651 kb on - strand, within BACOVA_03502 at 261.675 kb on + strand, within BACOVA_03502 at 261.720 kb on + strand, within BACOVA_03502 at 261.721 kb on - strand, within BACOVA_03502 at 261.725 kb on - strand, within BACOVA_03502 at 261.725 kb on - strand, within BACOVA_03502 at 261.759 kb on + strand, within BACOVA_03502 at 261.776 kb on - strand, within BACOVA_03502 at 261.863 kb on + strand at 261.899 kb on + strand at 261.900 kb on - strand at 261.900 kb on - strand at 261.900 kb on - strand at 261.936 kb on + strand at 261.936 kb on + strand at 261.938 kb on + strand at 261.938 kb on + strand at 261.950 kb on + strand at 261.954 kb on - strand at 261.956 kb on + strand at 261.956 kb on + strand at 261.956 kb on + strand at 261.957 kb on - strand at 261.960 kb on - strand at 261.960 kb on - strand at 261.960 kb on - strand at 261.968 kb on + strand at 261.999 kb on - strand at 262.007 kb on - strand at 262.007 kb on - strand at 262.008 kb on + strand at 262.009 kb on - strand at 262.023 kb on - strand at 262.049 kb on - strand at 262.060 kb on - strand at 262.071 kb on + strand at 262.072 kb on - strand at 262.072 kb on - strand at 262.073 kb on + strand at 262.073 kb on + strand at 262.074 kb on - strand at 262.074 kb on - strand at 262.074 kb on - strand at 262.100 kb on - strand at 262.100 kb on - strand at 262.101 kb on + strand at 262.101 kb on + strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.109 kb on + strand at 262.122 kb on + strand at 262.240 kb on - strand, within BACOVA_03503 at 262.247 kb on - strand, within BACOVA_03503 at 262.318 kb on + strand, within BACOVA_03503 at 262.319 kb on - strand, within BACOVA_03503 at 262.358 kb on + strand, within BACOVA_03503 at 262.358 kb on + strand, within BACOVA_03503 at 262.376 kb on - strand, within BACOVA_03503 at 262.396 kb on + strand, within BACOVA_03503 at 262.396 kb on + strand, within BACOVA_03503 at 262.397 kb on - strand, within BACOVA_03503 at 262.420 kb on - strand, within BACOVA_03503 at 262.480 kb on + strand, within BACOVA_03503 at 262.481 kb on - strand, within BACOVA_03503 at 262.481 kb on - strand, within BACOVA_03503 at 262.484 kb on + strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.543 kb on - strand, within BACOVA_03503 at 262.575 kb on + strand, within BACOVA_03503 at 262.575 kb on + strand, within BACOVA_03503 at 262.576 kb on - strand, within BACOVA_03503 at 262.579 kb on + strand, within BACOVA_03503 at 262.579 kb on + strand, within BACOVA_03503 at 262.581 kb on + strand, within BACOVA_03503 at 262.581 kb on + strand, within BACOVA_03503 at 262.582 kb on - strand, within BACOVA_03503 at 262.585 kb on + strand, within BACOVA_03503 at 262.610 kb on - strand, within BACOVA_03503 at 262.693 kb on + strand, within BACOVA_03503 at 262.732 kb on + strand, within BACOVA_03503 at 262.733 kb on - strand, within BACOVA_03503 at 262.829 kb on + strand at 262.833 kb on + strand at 262.834 kb on - strand at 262.834 kb on - strand at 262.836 kb on + strand at 262.836 kb on + strand at 262.839 kb on + strand at 262.840 kb on - strand at 262.840 kb on - strand at 262.861 kb on + strand at 262.870 kb on + strand at 262.921 kb on - strand at 262.936 kb on + strand at 262.949 kb on + strand at 262.949 kb on + strand at 262.949 kb on + strand at 262.950 kb on - strand at 262.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 259,827 + +1.0 259,847 + +0.7 259,850 + +1.9 259,850 + +1.3 259,851 - +1.0 259,902 + +0.2 259,902 + -0.8 259,931 + -0.6 259,932 - +1.3 259,934 - -1.1 259,934 - +0.8 259,953 - -0.1 259,979 + +1.3 259,984 + +0.1 259,985 - -1.6 259,985 - +0.4 259,985 - +1.0 260,025 - +0.0 260,078 - -1.8 260,127 + +0.9 260,245 - BACOVA_03502 0.13 +1.1 260,245 - BACOVA_03502 0.13 +0.6 260,395 - BACOVA_03502 0.21 +1.5 260,395 - BACOVA_03502 0.21 +0.6 260,416 + BACOVA_03502 0.22 -0.2 260,422 + BACOVA_03502 0.22 -0.1 260,423 - BACOVA_03502 0.22 +0.1 260,489 + BACOVA_03502 0.25 +1.1 260,490 - BACOVA_03502 0.25 -0.3 260,490 - BACOVA_03502 0.25 -0.6 260,561 + BACOVA_03502 0.29 +0.6 260,627 + BACOVA_03502 0.32 -0.9 260,627 + BACOVA_03502 0.32 +0.9 260,627 + BACOVA_03502 0.32 -0.2 260,629 + BACOVA_03502 0.32 -0.4 260,629 + BACOVA_03502 0.32 +0.1 260,633 + BACOVA_03502 0.33 -0.5 260,634 - BACOVA_03502 0.33 +0.5 260,634 - BACOVA_03502 0.33 -0.3 260,757 + BACOVA_03502 0.39 -0.4 260,757 + BACOVA_03502 0.39 +0.6 260,758 - BACOVA_03502 0.39 +0.9 260,759 + BACOVA_03502 0.39 +0.9 260,783 - BACOVA_03502 0.40 -1.3 260,791 - BACOVA_03502 0.40 +0.9 260,813 + BACOVA_03502 0.42 +1.4 260,830 + BACOVA_03502 0.42 -0.1 260,831 - BACOVA_03502 0.42 -0.4 260,833 + BACOVA_03502 0.43 +0.0 260,874 - BACOVA_03502 0.45 -1.9 260,874 - BACOVA_03502 0.45 -0.4 260,881 + BACOVA_03502 0.45 -0.4 260,884 - BACOVA_03502 0.45 +1.3 260,918 + BACOVA_03502 0.47 +0.9 260,958 - BACOVA_03502 0.49 +0.1 260,987 - BACOVA_03502 0.50 -1.8 260,989 - BACOVA_03502 0.50 +2.4 260,997 + BACOVA_03502 0.51 -0.9 260,998 - BACOVA_03502 0.51 -0.0 261,000 + BACOVA_03502 0.51 -0.8 261,000 + BACOVA_03502 0.51 -0.2 261,000 + BACOVA_03502 0.51 +0.7 261,001 - BACOVA_03502 0.51 -1.9 261,042 + BACOVA_03502 0.53 +0.9 261,042 + BACOVA_03502 0.53 -0.5 261,062 + BACOVA_03502 0.54 +0.2 261,063 - BACOVA_03502 0.54 +0.4 261,080 + BACOVA_03502 0.55 +0.1 261,102 + BACOVA_03502 0.56 +0.9 261,132 + BACOVA_03502 0.57 -0.6 261,166 + BACOVA_03502 0.59 +1.0 261,166 + BACOVA_03502 0.59 +0.3 261,167 - BACOVA_03502 0.59 +1.1 261,171 + BACOVA_03502 0.59 -0.5 261,172 - BACOVA_03502 0.59 -0.2 261,254 - BACOVA_03502 0.63 -0.3 261,310 - BACOVA_03502 0.66 +0.3 261,310 - BACOVA_03502 0.66 +0.3 261,370 - BACOVA_03502 0.69 -0.0 261,412 + BACOVA_03502 0.71 +1.0 261,425 + BACOVA_03502 0.72 +0.1 261,447 + BACOVA_03502 0.73 -0.2 261,465 - BACOVA_03502 0.74 -0.0 261,480 + BACOVA_03502 0.75 -0.8 261,534 + BACOVA_03502 0.77 -0.3 261,535 - BACOVA_03502 0.77 +0.5 261,621 - BACOVA_03502 0.82 -0.2 261,621 - BACOVA_03502 0.82 -0.2 261,621 - BACOVA_03502 0.82 -0.1 261,650 + BACOVA_03502 0.83 -0.2 261,650 + BACOVA_03502 0.83 -0.5 261,651 - BACOVA_03502 0.83 -0.4 261,675 + BACOVA_03502 0.84 -0.4 261,720 + BACOVA_03502 0.87 +0.1 261,721 - BACOVA_03502 0.87 -0.1 261,725 - BACOVA_03502 0.87 +1.2 261,725 - BACOVA_03502 0.87 -0.2 261,759 + BACOVA_03502 0.88 -0.5 261,776 - BACOVA_03502 0.89 +0.0 261,863 + +0.8 261,899 + -0.7 261,900 - -0.3 261,900 - -0.0 261,900 - +1.4 261,936 + +0.1 261,936 + -0.4 261,938 + +0.4 261,938 + +2.1 261,950 + -1.2 261,954 - -0.3 261,956 + +0.0 261,956 + +1.5 261,956 + +0.8 261,957 - -0.0 261,960 - +0.7 261,960 - +0.3 261,960 - -0.6 261,968 + -1.2 261,999 - +0.3 262,007 - +0.3 262,007 - -0.5 262,008 + -1.9 262,009 - -0.8 262,023 - +0.2 262,049 - +0.0 262,060 - +0.3 262,071 + -0.1 262,072 - +1.7 262,072 - +0.2 262,073 + +0.5 262,073 + +0.9 262,074 - -0.3 262,074 - -0.5 262,074 - +0.7 262,100 - -0.4 262,100 - -0.7 262,101 + +0.3 262,101 + -0.1 262,104 - -0.9 262,104 - -0.1 262,104 - -0.9 262,104 - -1.1 262,104 - -1.1 262,104 - -1.0 262,109 + -0.0 262,122 + -0.0 262,240 - BACOVA_03503 0.15 +0.2 262,247 - BACOVA_03503 0.16 +0.5 262,318 + BACOVA_03503 0.26 -0.4 262,319 - BACOVA_03503 0.26 -0.8 262,358 + BACOVA_03503 0.32 -0.2 262,358 + BACOVA_03503 0.32 -0.4 262,376 - BACOVA_03503 0.34 +0.7 262,396 + BACOVA_03503 0.37 -0.1 262,396 + BACOVA_03503 0.37 -1.0 262,397 - BACOVA_03503 0.38 -0.2 262,420 - BACOVA_03503 0.41 +1.1 262,480 + BACOVA_03503 0.49 +0.3 262,481 - BACOVA_03503 0.50 +0.2 262,481 - BACOVA_03503 0.50 +0.7 262,484 + BACOVA_03503 0.50 -0.9 262,485 - BACOVA_03503 0.50 +0.3 262,485 - BACOVA_03503 0.50 +0.2 262,485 - BACOVA_03503 0.50 -0.2 262,485 - BACOVA_03503 0.50 +0.5 262,543 - BACOVA_03503 0.58 -0.2 262,575 + BACOVA_03503 0.63 -0.1 262,575 + BACOVA_03503 0.63 +0.0 262,576 - BACOVA_03503 0.63 +0.7 262,579 + BACOVA_03503 0.64 -0.4 262,579 + BACOVA_03503 0.64 +0.0 262,581 + BACOVA_03503 0.64 +0.1 262,581 + BACOVA_03503 0.64 +0.3 262,582 - BACOVA_03503 0.64 +0.4 262,585 + BACOVA_03503 0.65 -0.3 262,610 - BACOVA_03503 0.68 +0.9 262,693 + BACOVA_03503 0.80 +0.0 262,732 + BACOVA_03503 0.86 +0.4 262,733 - BACOVA_03503 0.86 +0.1 262,829 + +0.2 262,833 + -0.9 262,834 - -0.8 262,834 - -0.1 262,836 + +0.8 262,836 + -1.1 262,839 + +0.6 262,840 - +0.3 262,840 - +0.0 262,861 + -1.4 262,870 + +0.9 262,921 - -0.7 262,936 + +2.2 262,949 + -0.6 262,949 + -0.9 262,949 + +0.3 262,950 - +0.4 262,965 - -0.1
Or see this region's nucleotide sequence