Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02950 and BACOVA_02951 are separated by 112 nucleotides BACOVA_02951 and BACOVA_02952 are separated by 71 nucleotides BACOVA_02952 and BACOVA_02953 are separated by 85 nucleotides BACOVA_02953 and BACOVA_02954 are separated by 50 nucleotides
BACOVA_02950: BACOVA_02950 - glycosyl hydrolase family 20, catalytic domain protein, at 22,549 to 25,080
_02950
BACOVA_02951: BACOVA_02951 - RNA polymerase sigma-70 factor, at 25,193 to 25,783
_02951
BACOVA_02952: BACOVA_02952 - sigma factor regulatory protein, FecR/PupR family, at 25,855 to 26,868
_02952
BACOVA_02953: BACOVA_02953 - hypothetical protein, at 26,954 to 27,085
_02953
BACOVA_02954: BACOVA_02954 - TonB-linked outer membrane protein, SusC/RagA family, at 27,136 to 30,504
_02954
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.876 kb on + strand at 24.879 kb on + strand at 24.879 kb on + strand at 24.884 kb on + strand at 24.885 kb on - strand at 24.896 kb on + strand at 24.896 kb on + strand at 24.896 kb on + strand at 24.897 kb on - strand at 24.897 kb on - strand at 24.899 kb on + strand at 24.909 kb on + strand at 24.910 kb on - strand at 24.975 kb on - strand at 25.030 kb on + strand at 25.034 kb on + strand at 25.049 kb on + strand at 25.049 kb on + strand at 25.049 kb on + strand at 25.050 kb on - strand at 25.050 kb on - strand at 25.054 kb on - strand at 25.058 kb on + strand at 25.058 kb on + strand at 25.075 kb on + strand at 25.076 kb on - strand at 25.078 kb on + strand at 25.078 kb on + strand at 25.085 kb on + strand at 25.128 kb on + strand at 25.143 kb on + strand at 25.186 kb on + strand at 25.187 kb on - strand at 25.216 kb on - strand at 25.218 kb on + strand at 25.218 kb on + strand at 25.256 kb on + strand, within BACOVA_02951 at 25.256 kb on + strand, within BACOVA_02951 at 25.256 kb on + strand, within BACOVA_02951 at 25.257 kb on - strand, within BACOVA_02951 at 25.262 kb on + strand, within BACOVA_02951 at 25.262 kb on + strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.263 kb on - strand, within BACOVA_02951 at 25.274 kb on + strand, within BACOVA_02951 at 25.309 kb on - strand, within BACOVA_02951 at 25.309 kb on - strand, within BACOVA_02951 at 25.397 kb on - strand, within BACOVA_02951 at 25.407 kb on - strand, within BACOVA_02951 at 25.407 kb on - strand, within BACOVA_02951 at 25.435 kb on + strand, within BACOVA_02951 at 25.436 kb on - strand, within BACOVA_02951 at 25.447 kb on + strand, within BACOVA_02951 at 25.448 kb on - strand, within BACOVA_02951 at 25.489 kb on + strand, within BACOVA_02951 at 25.490 kb on - strand, within BACOVA_02951 at 25.490 kb on - strand, within BACOVA_02951 at 25.503 kb on + strand, within BACOVA_02951 at 25.504 kb on - strand, within BACOVA_02951 at 25.542 kb on + strand, within BACOVA_02951 at 25.542 kb on + strand, within BACOVA_02951 at 25.546 kb on + strand, within BACOVA_02951 at 25.547 kb on - strand, within BACOVA_02951 at 25.547 kb on - strand, within BACOVA_02951 at 25.582 kb on + strand, within BACOVA_02951 at 25.583 kb on - strand, within BACOVA_02951 at 25.583 kb on - strand, within BACOVA_02951 at 25.590 kb on + strand, within BACOVA_02951 at 25.590 kb on + strand, within BACOVA_02951 at 25.594 kb on + strand, within BACOVA_02951 at 25.594 kb on + strand, within BACOVA_02951 at 25.595 kb on - strand, within BACOVA_02951 at 25.595 kb on - strand, within BACOVA_02951 at 25.674 kb on + strand, within BACOVA_02951 at 25.675 kb on - strand, within BACOVA_02951 at 25.697 kb on - strand, within BACOVA_02951 at 25.701 kb on - strand, within BACOVA_02951 at 25.719 kb on + strand, within BACOVA_02951 at 25.720 kb on - strand, within BACOVA_02951 at 25.728 kb on + strand at 25.740 kb on + strand at 25.741 kb on - strand at 25.744 kb on + strand at 25.749 kb on - strand at 25.827 kb on + strand at 25.839 kb on + strand at 25.839 kb on + strand at 25.839 kb on + strand at 25.842 kb on - strand at 25.842 kb on - strand at 25.876 kb on - strand at 25.897 kb on + strand at 26.035 kb on + strand, within BACOVA_02952 at 26.035 kb on + strand, within BACOVA_02952 at 26.041 kb on - strand, within BACOVA_02952 at 26.041 kb on - strand, within BACOVA_02952 at 26.058 kb on + strand, within BACOVA_02952 at 26.064 kb on + strand, within BACOVA_02952 at 26.074 kb on - strand, within BACOVA_02952 at 26.163 kb on - strand, within BACOVA_02952 at 26.186 kb on - strand, within BACOVA_02952 at 26.266 kb on + strand, within BACOVA_02952 at 26.267 kb on - strand, within BACOVA_02952 at 26.280 kb on + strand, within BACOVA_02952 at 26.280 kb on + strand, within BACOVA_02952 at 26.281 kb on - strand, within BACOVA_02952 at 26.288 kb on + strand, within BACOVA_02952 at 26.340 kb on + strand, within BACOVA_02952 at 26.340 kb on + strand, within BACOVA_02952 at 26.411 kb on + strand, within BACOVA_02952 at 26.412 kb on - strand, within BACOVA_02952 at 26.439 kb on - strand, within BACOVA_02952 at 26.455 kb on - strand, within BACOVA_02952 at 26.455 kb on - strand, within BACOVA_02952 at 26.489 kb on + strand, within BACOVA_02952 at 26.489 kb on + strand, within BACOVA_02952 at 26.489 kb on + strand, within BACOVA_02952 at 26.490 kb on - strand, within BACOVA_02952 at 26.490 kb on - strand, within BACOVA_02952 at 26.492 kb on + strand, within BACOVA_02952 at 26.499 kb on - strand, within BACOVA_02952 at 26.524 kb on - strand, within BACOVA_02952 at 26.524 kb on - strand, within BACOVA_02952 at 26.576 kb on + strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.580 kb on - strand, within BACOVA_02952 at 26.606 kb on + strand, within BACOVA_02952 at 26.607 kb on - strand, within BACOVA_02952 at 26.704 kb on - strand, within BACOVA_02952 at 26.704 kb on - strand, within BACOVA_02952 at 26.714 kb on + strand, within BACOVA_02952 at 26.714 kb on + strand, within BACOVA_02952 at 26.714 kb on + strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.715 kb on - strand, within BACOVA_02952 at 26.718 kb on + strand, within BACOVA_02952 at 26.741 kb on + strand, within BACOVA_02952 at 26.759 kb on - strand, within BACOVA_02952 at 26.788 kb on - strand at 26.829 kb on - strand at 26.833 kb on + strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.835 kb on + strand at 26.836 kb on - strand at 26.854 kb on - strand at 26.855 kb on + strand at 26.855 kb on + strand at 26.855 kb on + strand at 26.856 kb on - strand at 26.860 kb on - strand at 26.860 kb on - strand at 26.860 kb on - strand at 26.866 kb on + strand at 26.885 kb on + strand at 26.886 kb on - strand at 26.886 kb on - strand at 26.886 kb on - strand at 26.886 kb on - strand at 26.887 kb on + strand at 26.891 kb on - strand at 26.894 kb on - strand at 26.894 kb on - strand at 26.909 kb on + strand at 26.923 kb on + strand at 26.923 kb on + strand at 26.936 kb on + strand at 26.938 kb on + strand at 26.945 kb on - strand at 26.955 kb on + strand at 26.960 kb on + strand at 26.961 kb on - strand at 27.081 kb on + strand at 27.081 kb on + strand at 27.082 kb on - strand at 27.082 kb on - strand at 27.082 kb on - strand at 27.103 kb on - strand at 27.121 kb on + strand at 27.143 kb on - strand at 27.164 kb on - strand at 27.186 kb on + strand at 27.191 kb on + strand at 27.191 kb on + strand at 27.191 kb on + strand at 27.192 kb on - strand at 27.192 kb on - strand at 27.192 kb on - strand at 27.192 kb on - strand at 27.192 kb on - strand at 27.287 kb on + strand at 27.292 kb on - strand at 27.388 kb on + strand at 27.389 kb on - strand at 27.389 kb on - strand at 27.411 kb on + strand at 27.505 kb on - strand, within BACOVA_02954 at 27.517 kb on - strand, within BACOVA_02954 at 27.522 kb on - strand, within BACOVA_02954 at 27.522 kb on - strand, within BACOVA_02954 at 27.599 kb on + strand, within BACOVA_02954 at 27.600 kb on - strand, within BACOVA_02954 at 27.613 kb on + strand, within BACOVA_02954 at 27.613 kb on + strand, within BACOVA_02954 at 27.613 kb on + strand, within BACOVA_02954 at 27.614 kb on - strand, within BACOVA_02954 at 27.614 kb on - strand, within BACOVA_02954 at 27.644 kb on + strand, within BACOVA_02954 at 27.675 kb on - strand, within BACOVA_02954 at 27.710 kb on + strand, within BACOVA_02954 at 27.711 kb on - strand, within BACOVA_02954 at 27.711 kb on - strand, within BACOVA_02954 at 27.711 kb on - strand, within BACOVA_02954 at 27.743 kb on + strand, within BACOVA_02954 at 27.753 kb on + strand, within BACOVA_02954 at 27.795 kb on + strand, within BACOVA_02954 at 27.803 kb on + strand, within BACOVA_02954 at 27.804 kb on - strand, within BACOVA_02954 at 27.804 kb on - strand, within BACOVA_02954 at 27.810 kb on + strand, within BACOVA_02954 at 27.810 kb on + strand, within BACOVA_02954 at 27.811 kb on - strand, within BACOVA_02954 at 27.844 kb on - strand, within BACOVA_02954 at 27.852 kb on + strand, within BACOVA_02954 at 27.853 kb on - strand, within BACOVA_02954
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 24,876 + +0.1 24,879 + +0.3 24,879 + -0.5 24,884 + -0.7 24,885 - -0.5 24,896 + +0.1 24,896 + -1.2 24,896 + +0.0 24,897 - -0.3 24,897 - -1.6 24,899 + -0.7 24,909 + +0.8 24,910 - +0.8 24,975 - -0.2 25,030 + +1.1 25,034 + -0.4 25,049 + -0.3 25,049 + +0.9 25,049 + +1.3 25,050 - -0.1 25,050 - -0.4 25,054 - +0.4 25,058 + +0.3 25,058 + -2.8 25,075 + +0.6 25,076 - +0.6 25,078 + -0.0 25,078 + -0.1 25,085 + +0.8 25,128 + -0.3 25,143 + +0.3 25,186 + -0.6 25,187 - +0.1 25,216 - -0.5 25,218 + -0.1 25,218 + -1.3 25,256 + BACOVA_02951 0.11 -0.4 25,256 + BACOVA_02951 0.11 -0.3 25,256 + BACOVA_02951 0.11 -0.3 25,257 - BACOVA_02951 0.11 +1.0 25,262 + BACOVA_02951 0.12 -0.1 25,262 + BACOVA_02951 0.12 +0.3 25,263 - BACOVA_02951 0.12 -0.9 25,263 - BACOVA_02951 0.12 +0.2 25,263 - BACOVA_02951 0.12 -0.4 25,263 - BACOVA_02951 0.12 +0.8 25,263 - BACOVA_02951 0.12 -0.5 25,263 - BACOVA_02951 0.12 -1.3 25,263 - BACOVA_02951 0.12 -1.9 25,274 + BACOVA_02951 0.14 -0.2 25,309 - BACOVA_02951 0.20 -1.0 25,309 - BACOVA_02951 0.20 +0.3 25,397 - BACOVA_02951 0.35 +0.1 25,407 - BACOVA_02951 0.36 +0.2 25,407 - BACOVA_02951 0.36 +0.8 25,435 + BACOVA_02951 0.41 -0.8 25,436 - BACOVA_02951 0.41 +0.2 25,447 + BACOVA_02951 0.43 +0.4 25,448 - BACOVA_02951 0.43 -0.0 25,489 + BACOVA_02951 0.50 +0.2 25,490 - BACOVA_02951 0.50 -0.5 25,490 - BACOVA_02951 0.50 +0.3 25,503 + BACOVA_02951 0.52 -0.8 25,504 - BACOVA_02951 0.53 +0.5 25,542 + BACOVA_02951 0.59 +0.1 25,542 + BACOVA_02951 0.59 -0.4 25,546 + BACOVA_02951 0.60 -0.4 25,547 - BACOVA_02951 0.60 -0.0 25,547 - BACOVA_02951 0.60 -1.2 25,582 + BACOVA_02951 0.66 +1.1 25,583 - BACOVA_02951 0.66 -0.7 25,583 - BACOVA_02951 0.66 +0.0 25,590 + BACOVA_02951 0.67 -0.2 25,590 + BACOVA_02951 0.67 -0.4 25,594 + BACOVA_02951 0.68 -0.9 25,594 + BACOVA_02951 0.68 -0.5 25,595 - BACOVA_02951 0.68 -0.5 25,595 - BACOVA_02951 0.68 +0.4 25,674 + BACOVA_02951 0.81 +1.8 25,675 - BACOVA_02951 0.82 -0.5 25,697 - BACOVA_02951 0.85 +0.7 25,701 - BACOVA_02951 0.86 +0.2 25,719 + BACOVA_02951 0.89 -0.9 25,720 - BACOVA_02951 0.89 -0.4 25,728 + -0.3 25,740 + +0.4 25,741 - -0.3 25,744 + +0.2 25,749 - -0.5 25,827 + -0.7 25,839 + -0.6 25,839 + -2.0 25,839 + -1.6 25,842 - -0.4 25,842 - -0.2 25,876 - +0.9 25,897 + -0.5 26,035 + BACOVA_02952 0.18 -0.0 26,035 + BACOVA_02952 0.18 -1.0 26,041 - BACOVA_02952 0.18 +0.6 26,041 - BACOVA_02952 0.18 +0.7 26,058 + BACOVA_02952 0.20 -0.6 26,064 + BACOVA_02952 0.21 +0.6 26,074 - BACOVA_02952 0.22 -0.3 26,163 - BACOVA_02952 0.30 -0.3 26,186 - BACOVA_02952 0.33 -0.7 26,266 + BACOVA_02952 0.41 +0.1 26,267 - BACOVA_02952 0.41 -0.4 26,280 + BACOVA_02952 0.42 +0.4 26,280 + BACOVA_02952 0.42 -1.5 26,281 - BACOVA_02952 0.42 -0.5 26,288 + BACOVA_02952 0.43 -2.1 26,340 + BACOVA_02952 0.48 +0.9 26,340 + BACOVA_02952 0.48 -0.2 26,411 + BACOVA_02952 0.55 -0.8 26,412 - BACOVA_02952 0.55 -0.3 26,439 - BACOVA_02952 0.58 -0.3 26,455 - BACOVA_02952 0.59 -1.1 26,455 - BACOVA_02952 0.59 -0.3 26,489 + BACOVA_02952 0.63 +0.5 26,489 + BACOVA_02952 0.63 -1.3 26,489 + BACOVA_02952 0.63 -2.6 26,490 - BACOVA_02952 0.63 -0.5 26,490 - BACOVA_02952 0.63 -2.0 26,492 + BACOVA_02952 0.63 -0.7 26,499 - BACOVA_02952 0.64 +0.5 26,524 - BACOVA_02952 0.66 -0.3 26,524 - BACOVA_02952 0.66 -0.0 26,576 + BACOVA_02952 0.71 -2.4 26,580 - BACOVA_02952 0.71 +0.4 26,580 - BACOVA_02952 0.71 -1.2 26,580 - BACOVA_02952 0.71 -1.2 26,580 - BACOVA_02952 0.71 -0.2 26,606 + BACOVA_02952 0.74 +2.1 26,607 - BACOVA_02952 0.74 -1.7 26,704 - BACOVA_02952 0.84 -0.8 26,704 - BACOVA_02952 0.84 +0.7 26,714 + BACOVA_02952 0.85 -0.4 26,714 + BACOVA_02952 0.85 -0.5 26,714 + BACOVA_02952 0.85 -3.0 26,715 - BACOVA_02952 0.85 +0.2 26,715 - BACOVA_02952 0.85 -1.2 26,715 - BACOVA_02952 0.85 -0.2 26,715 - BACOVA_02952 0.85 -1.0 26,718 + BACOVA_02952 0.85 -0.0 26,741 + BACOVA_02952 0.87 +0.1 26,759 - BACOVA_02952 0.89 +0.3 26,788 - -0.1 26,829 - +0.2 26,833 + -0.8 26,834 - +0.7 26,834 - +0.6 26,835 + -0.8 26,836 - +0.6 26,854 - +0.6 26,855 + -1.7 26,855 + -0.2 26,855 + -1.1 26,856 - -0.3 26,860 - -0.2 26,860 - +0.4 26,860 - -1.1 26,866 + -0.6 26,885 + -1.1 26,886 - +0.5 26,886 - +0.2 26,886 - -0.2 26,886 - +0.2 26,887 + -1.3 26,891 - +1.8 26,894 - +0.2 26,894 - -1.9 26,909 + +2.1 26,923 + -0.4 26,923 + +0.1 26,936 + +0.8 26,938 + -0.2 26,945 - -0.3 26,955 + +0.1 26,960 + -0.8 26,961 - +0.5 27,081 + -0.1 27,081 + +0.5 27,082 - +0.5 27,082 - -0.1 27,082 - -0.1 27,103 - +0.6 27,121 + -1.8 27,143 - +0.1 27,164 - +0.5 27,186 + +0.1 27,191 + +0.7 27,191 + -1.0 27,191 + -0.4 27,192 - -0.4 27,192 - +0.4 27,192 - +0.5 27,192 - -0.0 27,192 - -0.3 27,287 + -0.2 27,292 - +0.0 27,388 + -0.2 27,389 - +0.7 27,389 - -1.8 27,411 + -0.4 27,505 - BACOVA_02954 0.11 -0.3 27,517 - BACOVA_02954 0.11 -0.7 27,522 - BACOVA_02954 0.11 +0.3 27,522 - BACOVA_02954 0.11 +1.5 27,599 + BACOVA_02954 0.14 +0.0 27,600 - BACOVA_02954 0.14 -0.5 27,613 + BACOVA_02954 0.14 +0.8 27,613 + BACOVA_02954 0.14 +0.3 27,613 + BACOVA_02954 0.14 -1.5 27,614 - BACOVA_02954 0.14 +0.7 27,614 - BACOVA_02954 0.14 -0.1 27,644 + BACOVA_02954 0.15 -1.3 27,675 - BACOVA_02954 0.16 -0.3 27,710 + BACOVA_02954 0.17 -1.2 27,711 - BACOVA_02954 0.17 +1.0 27,711 - BACOVA_02954 0.17 -0.1 27,711 - BACOVA_02954 0.17 -0.5 27,743 + BACOVA_02954 0.18 +0.3 27,753 + BACOVA_02954 0.18 +1.0 27,795 + BACOVA_02954 0.20 -0.3 27,803 + BACOVA_02954 0.20 +0.6 27,804 - BACOVA_02954 0.20 -0.1 27,804 - BACOVA_02954 0.20 -0.5 27,810 + BACOVA_02954 0.20 -0.3 27,810 + BACOVA_02954 0.20 +0.3 27,811 - BACOVA_02954 0.20 +0.4 27,844 - BACOVA_02954 0.21 -0.7 27,852 + BACOVA_02954 0.21 -0.3 27,853 - BACOVA_02954 0.21 -0.0
Or see this region's nucleotide sequence