Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02851 and BACOVA_02852 are separated by 25 nucleotides BACOVA_02852 and BACOVA_02853 are separated by 115 nucleotides
BACOVA_02851: BACOVA_02851 - hypothetical protein, at 333,066 to 335,414
_02851
BACOVA_02852: BACOVA_02852 - hypothetical protein, at 335,440 to 337,551
_02852
BACOVA_02853: BACOVA_02853 - radical SAM domain protein, at 337,667 to 338,440
_02853
Position (kb) 335
336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.441 kb on - strand, within BACOVA_02851 at 334.442 kb on + strand, within BACOVA_02851 at 334.443 kb on - strand, within BACOVA_02851 at 334.445 kb on + strand, within BACOVA_02851 at 334.445 kb on + strand, within BACOVA_02851 at 334.446 kb on - strand, within BACOVA_02851 at 334.451 kb on + strand, within BACOVA_02851 at 334.451 kb on + strand, within BACOVA_02851 at 334.467 kb on + strand, within BACOVA_02851 at 334.468 kb on - strand, within BACOVA_02851 at 334.479 kb on - strand, within BACOVA_02851 at 334.479 kb on - strand, within BACOVA_02851 at 334.528 kb on + strand, within BACOVA_02851 at 334.547 kb on + strand, within BACOVA_02851 at 334.547 kb on + strand, within BACOVA_02851 at 334.548 kb on - strand, within BACOVA_02851 at 334.548 kb on - strand, within BACOVA_02851 at 334.548 kb on - strand, within BACOVA_02851 at 334.557 kb on - strand, within BACOVA_02851 at 334.575 kb on - strand, within BACOVA_02851 at 334.655 kb on - strand, within BACOVA_02851 at 334.678 kb on + strand, within BACOVA_02851 at 334.678 kb on + strand, within BACOVA_02851 at 334.679 kb on - strand, within BACOVA_02851 at 334.716 kb on - strand, within BACOVA_02851 at 334.716 kb on - strand, within BACOVA_02851 at 334.750 kb on - strand, within BACOVA_02851 at 334.788 kb on - strand, within BACOVA_02851 at 334.807 kb on + strand, within BACOVA_02851 at 334.842 kb on - strand, within BACOVA_02851 at 334.914 kb on + strand, within BACOVA_02851 at 334.915 kb on - strand, within BACOVA_02851 at 334.935 kb on + strand, within BACOVA_02851 at 334.940 kb on + strand, within BACOVA_02851 at 334.941 kb on - strand, within BACOVA_02851 at 334.949 kb on + strand, within BACOVA_02851 at 334.950 kb on - strand, within BACOVA_02851 at 334.958 kb on + strand, within BACOVA_02851 at 334.959 kb on - strand, within BACOVA_02851 at 334.968 kb on + strand, within BACOVA_02851 at 334.969 kb on - strand, within BACOVA_02851 at 334.970 kb on + strand, within BACOVA_02851 at 334.970 kb on + strand, within BACOVA_02851 at 334.971 kb on - strand, within BACOVA_02851 at 334.971 kb on - strand, within BACOVA_02851 at 334.971 kb on - strand, within BACOVA_02851 at 334.972 kb on + strand, within BACOVA_02851 at 334.973 kb on - strand, within BACOVA_02851 at 334.976 kb on - strand, within BACOVA_02851 at 335.010 kb on - strand, within BACOVA_02851 at 335.055 kb on + strand, within BACOVA_02851 at 335.126 kb on + strand, within BACOVA_02851 at 335.126 kb on + strand, within BACOVA_02851 at 335.126 kb on + strand, within BACOVA_02851 at 335.127 kb on - strand, within BACOVA_02851 at 335.158 kb on + strand, within BACOVA_02851 at 335.159 kb on - strand, within BACOVA_02851 at 335.170 kb on + strand, within BACOVA_02851 at 335.201 kb on - strand at 335.210 kb on + strand at 335.210 kb on + strand at 335.211 kb on - strand at 335.217 kb on - strand at 335.217 kb on - strand at 335.232 kb on + strand at 335.233 kb on - strand at 335.240 kb on + strand at 335.262 kb on - strand at 335.276 kb on - strand at 335.344 kb on - strand at 335.344 kb on - strand at 335.346 kb on - strand at 335.346 kb on - strand at 335.352 kb on - strand at 335.352 kb on - strand at 335.403 kb on - strand at 335.548 kb on - strand at 335.548 kb on - strand at 335.572 kb on + strand at 335.572 kb on + strand at 335.572 kb on + strand at 335.572 kb on + strand at 335.573 kb on - strand at 335.594 kb on - strand at 335.594 kb on - strand at 335.648 kb on + strand at 335.663 kb on - strand, within BACOVA_02852 at 335.696 kb on + strand, within BACOVA_02852 at 335.704 kb on - strand, within BACOVA_02852 at 335.706 kb on + strand, within BACOVA_02852 at 335.706 kb on + strand, within BACOVA_02852 at 335.708 kb on + strand, within BACOVA_02852 at 335.709 kb on - strand, within BACOVA_02852 at 335.709 kb on - strand, within BACOVA_02852 at 335.751 kb on + strand, within BACOVA_02852 at 335.761 kb on - strand, within BACOVA_02852 at 335.783 kb on - strand, within BACOVA_02852 at 335.808 kb on + strand, within BACOVA_02852 at 335.809 kb on - strand, within BACOVA_02852 at 335.866 kb on - strand, within BACOVA_02852 at 335.885 kb on - strand, within BACOVA_02852 at 335.914 kb on + strand, within BACOVA_02852 at 335.914 kb on + strand, within BACOVA_02852 at 335.915 kb on - strand, within BACOVA_02852 at 335.922 kb on + strand, within BACOVA_02852 at 335.923 kb on - strand, within BACOVA_02852 at 335.969 kb on + strand, within BACOVA_02852 at 335.970 kb on - strand, within BACOVA_02852 at 335.997 kb on + strand, within BACOVA_02852 at 336.034 kb on + strand, within BACOVA_02852 at 336.034 kb on + strand, within BACOVA_02852 at 336.035 kb on - strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.036 kb on + strand, within BACOVA_02852 at 336.037 kb on - strand, within BACOVA_02852 at 336.037 kb on - strand, within BACOVA_02852 at 336.037 kb on - strand, within BACOVA_02852 at 336.060 kb on - strand, within BACOVA_02852 at 336.073 kb on - strand, within BACOVA_02852 at 336.073 kb on - strand, within BACOVA_02852 at 336.075 kb on + strand, within BACOVA_02852 at 336.075 kb on + strand, within BACOVA_02852 at 336.075 kb on + strand, within BACOVA_02852 at 336.076 kb on - strand, within BACOVA_02852 at 336.076 kb on - strand, within BACOVA_02852 at 336.102 kb on - strand, within BACOVA_02852 at 336.152 kb on + strand, within BACOVA_02852 at 336.181 kb on + strand, within BACOVA_02852 at 336.201 kb on + strand, within BACOVA_02852 at 336.234 kb on + strand, within BACOVA_02852 at 336.260 kb on + strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.261 kb on - strand, within BACOVA_02852 at 336.265 kb on - strand, within BACOVA_02852 at 336.296 kb on + strand, within BACOVA_02852 at 336.333 kb on + strand, within BACOVA_02852 at 336.342 kb on + strand, within BACOVA_02852 at 336.363 kb on - strand, within BACOVA_02852 at 336.408 kb on + strand, within BACOVA_02852 at 336.409 kb on - strand, within BACOVA_02852 at 336.409 kb on - strand, within BACOVA_02852 at 336.415 kb on + strand, within BACOVA_02852 at 336.450 kb on + strand, within BACOVA_02852 at 336.451 kb on - strand, within BACOVA_02852 at 336.533 kb on - strand, within BACOVA_02852 at 336.565 kb on - strand, within BACOVA_02852 at 336.565 kb on - strand, within BACOVA_02852 at 336.585 kb on + strand, within BACOVA_02852 at 336.585 kb on + strand, within BACOVA_02852 at 336.586 kb on - strand, within BACOVA_02852 at 336.586 kb on - strand, within BACOVA_02852 at 336.638 kb on - strand, within BACOVA_02852 at 336.638 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.645 kb on - strand, within BACOVA_02852 at 336.689 kb on + strand, within BACOVA_02852 at 336.798 kb on + strand, within BACOVA_02852 at 336.799 kb on - strand, within BACOVA_02852 at 336.799 kb on - strand, within BACOVA_02852 at 336.822 kb on - strand, within BACOVA_02852 at 336.871 kb on + strand, within BACOVA_02852 at 336.872 kb on - strand, within BACOVA_02852 at 336.874 kb on - strand, within BACOVA_02852 at 336.902 kb on + strand, within BACOVA_02852 at 336.929 kb on - strand, within BACOVA_02852 at 336.929 kb on - strand, within BACOVA_02852 at 336.944 kb on - strand, within BACOVA_02852 at 336.969 kb on + strand, within BACOVA_02852 at 336.969 kb on + strand, within BACOVA_02852 at 336.971 kb on + strand, within BACOVA_02852 at 336.971 kb on + strand, within BACOVA_02852 at 336.973 kb on + strand, within BACOVA_02852 at 336.974 kb on - strand, within BACOVA_02852 at 336.985 kb on - strand, within BACOVA_02852 at 336.985 kb on - strand, within BACOVA_02852 at 337.033 kb on - strand, within BACOVA_02852 at 337.125 kb on - strand, within BACOVA_02852 at 337.288 kb on - strand, within BACOVA_02852 at 337.300 kb on - strand, within BACOVA_02852 at 337.330 kb on + strand, within BACOVA_02852 at 337.355 kb on + strand at 337.355 kb on + strand at 337.402 kb on - strand at 337.402 kb on - strand at 337.404 kb on + strand at 337.409 kb on + strand at 337.501 kb on + strand at 337.502 kb on - strand at 337.527 kb on - strand at 337.560 kb on - strand at 337.564 kb on + strand at 337.568 kb on - strand at 337.568 kb on - strand at 337.610 kb on - strand at 337.610 kb on - strand at 337.610 kb on - strand at 337.615 kb on - strand at 337.616 kb on + strand at 337.644 kb on + strand at 337.645 kb on - strand at 337.658 kb on + strand at 337.659 kb on - strand at 337.664 kb on - strand at 337.965 kb on + strand, within BACOVA_02853 at 338.032 kb on + strand, within BACOVA_02853 at 338.077 kb on - strand, within BACOVA_02853 at 338.081 kb on - strand, within BACOVA_02853 at 338.081 kb on - strand, within BACOVA_02853 at 338.084 kb on - strand, within BACOVA_02853 at 338.086 kb on + strand, within BACOVA_02853 at 338.118 kb on - strand, within BACOVA_02853 at 338.251 kb on + strand, within BACOVA_02853 at 338.251 kb on + strand, within BACOVA_02853 at 338.252 kb on - strand, within BACOVA_02853 at 338.252 kb on - strand, within BACOVA_02853 at 338.254 kb on + strand, within BACOVA_02853 at 338.322 kb on + strand, within BACOVA_02853 at 338.324 kb on + strand, within BACOVA_02853 at 338.326 kb on + strand, within BACOVA_02853 at 338.326 kb on + strand, within BACOVA_02853 at 338.327 kb on - strand, within BACOVA_02853 at 338.383 kb on - strand at 338.389 kb on + strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.435 kb on + strand at 338.444 kb on - strand at 338.462 kb on + strand at 338.463 kb on - strand at 338.476 kb on - strand at 338.479 kb on - strand at 338.496 kb on + strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.529 kb on - strand at 338.531 kb on - strand at 338.537 kb on + strand at 338.542 kb on + strand at 338.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 334,441 - BACOVA_02851 0.59 -2.5 334,442 + BACOVA_02851 0.59 -0.5 334,443 - BACOVA_02851 0.59 -1.0 334,445 + BACOVA_02851 0.59 -0.2 334,445 + BACOVA_02851 0.59 -0.3 334,446 - BACOVA_02851 0.59 +0.6 334,451 + BACOVA_02851 0.59 -0.6 334,451 + BACOVA_02851 0.59 +0.8 334,467 + BACOVA_02851 0.60 -1.2 334,468 - BACOVA_02851 0.60 +0.8 334,479 - BACOVA_02851 0.60 -0.4 334,479 - BACOVA_02851 0.60 -1.0 334,528 + BACOVA_02851 0.62 +0.2 334,547 + BACOVA_02851 0.63 -0.8 334,547 + BACOVA_02851 0.63 -1.2 334,548 - BACOVA_02851 0.63 -0.6 334,548 - BACOVA_02851 0.63 +0.2 334,548 - BACOVA_02851 0.63 -0.5 334,557 - BACOVA_02851 0.63 +1.1 334,575 - BACOVA_02851 0.64 +0.2 334,655 - BACOVA_02851 0.68 +0.5 334,678 + BACOVA_02851 0.69 -0.7 334,678 + BACOVA_02851 0.69 -1.9 334,679 - BACOVA_02851 0.69 +0.6 334,716 - BACOVA_02851 0.70 +2.2 334,716 - BACOVA_02851 0.70 -0.5 334,750 - BACOVA_02851 0.72 -0.5 334,788 - BACOVA_02851 0.73 -0.4 334,807 + BACOVA_02851 0.74 +0.0 334,842 - BACOVA_02851 0.76 -0.2 334,914 + BACOVA_02851 0.79 -0.4 334,915 - BACOVA_02851 0.79 -0.2 334,935 + BACOVA_02851 0.80 -1.4 334,940 + BACOVA_02851 0.80 -0.6 334,941 - BACOVA_02851 0.80 -0.2 334,949 + BACOVA_02851 0.80 -0.1 334,950 - BACOVA_02851 0.80 +1.0 334,958 + BACOVA_02851 0.81 -2.0 334,959 - BACOVA_02851 0.81 +0.8 334,968 + BACOVA_02851 0.81 -0.8 334,969 - BACOVA_02851 0.81 -1.4 334,970 + BACOVA_02851 0.81 -2.2 334,970 + BACOVA_02851 0.81 +0.1 334,971 - BACOVA_02851 0.81 +0.4 334,971 - BACOVA_02851 0.81 +0.6 334,971 - BACOVA_02851 0.81 -0.2 334,972 + BACOVA_02851 0.81 +0.3 334,973 - BACOVA_02851 0.81 +0.8 334,976 - BACOVA_02851 0.81 -0.1 335,010 - BACOVA_02851 0.83 -0.1 335,055 + BACOVA_02851 0.85 -0.8 335,126 + BACOVA_02851 0.88 -0.2 335,126 + BACOVA_02851 0.88 -1.1 335,126 + BACOVA_02851 0.88 +1.3 335,127 - BACOVA_02851 0.88 -0.1 335,158 + BACOVA_02851 0.89 +1.6 335,159 - BACOVA_02851 0.89 +0.4 335,170 + BACOVA_02851 0.90 +1.1 335,201 - +0.4 335,210 + +0.2 335,210 + +0.3 335,211 - -0.1 335,217 - -1.3 335,217 - -0.1 335,232 + -0.3 335,233 - +0.7 335,240 + +1.0 335,262 - +0.6 335,276 - -1.9 335,344 - +0.4 335,344 - +0.3 335,346 - -0.2 335,346 - -0.4 335,352 - +0.2 335,352 - -1.2 335,403 - -0.4 335,548 - +1.2 335,548 - -1.0 335,572 + +0.2 335,572 + -0.6 335,572 + -0.5 335,572 + +0.6 335,573 - +0.0 335,594 - -0.8 335,594 - +0.5 335,648 + -1.5 335,663 - BACOVA_02852 0.11 +0.1 335,696 + BACOVA_02852 0.12 +0.6 335,704 - BACOVA_02852 0.12 +0.2 335,706 + BACOVA_02852 0.13 +0.1 335,706 + BACOVA_02852 0.13 +0.2 335,708 + BACOVA_02852 0.13 -0.0 335,709 - BACOVA_02852 0.13 -0.9 335,709 - BACOVA_02852 0.13 +2.0 335,751 + BACOVA_02852 0.15 -0.6 335,761 - BACOVA_02852 0.15 +0.2 335,783 - BACOVA_02852 0.16 +0.0 335,808 + BACOVA_02852 0.17 -0.0 335,809 - BACOVA_02852 0.17 +0.9 335,866 - BACOVA_02852 0.20 -0.0 335,885 - BACOVA_02852 0.21 -0.0 335,914 + BACOVA_02852 0.22 +0.8 335,914 + BACOVA_02852 0.22 -1.3 335,915 - BACOVA_02852 0.22 +1.0 335,922 + BACOVA_02852 0.23 -0.2 335,923 - BACOVA_02852 0.23 -1.1 335,969 + BACOVA_02852 0.25 -0.2 335,970 - BACOVA_02852 0.25 -1.6 335,997 + BACOVA_02852 0.26 +0.4 336,034 + BACOVA_02852 0.28 +0.6 336,034 + BACOVA_02852 0.28 -0.8 336,035 - BACOVA_02852 0.28 +1.8 336,036 + BACOVA_02852 0.28 +1.3 336,036 + BACOVA_02852 0.28 +0.4 336,036 + BACOVA_02852 0.28 -0.6 336,036 + BACOVA_02852 0.28 -0.4 336,037 - BACOVA_02852 0.28 -2.1 336,037 - BACOVA_02852 0.28 +0.6 336,037 - BACOVA_02852 0.28 -0.4 336,060 - BACOVA_02852 0.29 -0.5 336,073 - BACOVA_02852 0.30 +0.7 336,073 - BACOVA_02852 0.30 -1.2 336,075 + BACOVA_02852 0.30 -0.5 336,075 + BACOVA_02852 0.30 -1.0 336,075 + BACOVA_02852 0.30 +0.1 336,076 - BACOVA_02852 0.30 -0.2 336,076 - BACOVA_02852 0.30 +0.1 336,102 - BACOVA_02852 0.31 +0.9 336,152 + BACOVA_02852 0.34 -0.6 336,181 + BACOVA_02852 0.35 -0.5 336,201 + BACOVA_02852 0.36 -0.0 336,234 + BACOVA_02852 0.38 +1.7 336,260 + BACOVA_02852 0.39 -0.5 336,261 - BACOVA_02852 0.39 -0.7 336,261 - BACOVA_02852 0.39 +0.7 336,261 - BACOVA_02852 0.39 -0.2 336,261 - BACOVA_02852 0.39 -0.2 336,265 - BACOVA_02852 0.39 -0.5 336,296 + BACOVA_02852 0.41 -0.6 336,333 + BACOVA_02852 0.42 +1.1 336,342 + BACOVA_02852 0.43 -1.1 336,363 - BACOVA_02852 0.44 -0.9 336,408 + BACOVA_02852 0.46 -0.7 336,409 - BACOVA_02852 0.46 +0.7 336,409 - BACOVA_02852 0.46 +0.6 336,415 + BACOVA_02852 0.46 +1.1 336,450 + BACOVA_02852 0.48 -0.3 336,451 - BACOVA_02852 0.48 +0.4 336,533 - BACOVA_02852 0.52 +0.6 336,565 - BACOVA_02852 0.53 +0.0 336,565 - BACOVA_02852 0.53 -1.0 336,585 + BACOVA_02852 0.54 -0.4 336,585 + BACOVA_02852 0.54 +1.0 336,586 - BACOVA_02852 0.54 +0.3 336,586 - BACOVA_02852 0.54 -1.8 336,638 - BACOVA_02852 0.57 +0.1 336,638 - BACOVA_02852 0.57 -1.0 336,645 - BACOVA_02852 0.57 -0.4 336,645 - BACOVA_02852 0.57 -0.5 336,645 - BACOVA_02852 0.57 +0.0 336,645 - BACOVA_02852 0.57 +0.4 336,689 + BACOVA_02852 0.59 -0.9 336,798 + BACOVA_02852 0.64 +0.5 336,799 - BACOVA_02852 0.64 +0.1 336,799 - BACOVA_02852 0.64 +0.0 336,822 - BACOVA_02852 0.65 -1.1 336,871 + BACOVA_02852 0.68 -0.5 336,872 - BACOVA_02852 0.68 +0.3 336,874 - BACOVA_02852 0.68 -1.8 336,902 + BACOVA_02852 0.69 +0.3 336,929 - BACOVA_02852 0.71 -0.7 336,929 - BACOVA_02852 0.71 +1.0 336,944 - BACOVA_02852 0.71 +0.2 336,969 + BACOVA_02852 0.72 +0.2 336,969 + BACOVA_02852 0.72 -0.2 336,971 + BACOVA_02852 0.72 -0.1 336,971 + BACOVA_02852 0.72 -0.5 336,973 + BACOVA_02852 0.73 -0.1 336,974 - BACOVA_02852 0.73 +0.0 336,985 - BACOVA_02852 0.73 +0.2 336,985 - BACOVA_02852 0.73 +1.1 337,033 - BACOVA_02852 0.75 +0.2 337,125 - BACOVA_02852 0.80 +0.2 337,288 - BACOVA_02852 0.88 -0.1 337,300 - BACOVA_02852 0.88 -0.5 337,330 + BACOVA_02852 0.89 -0.2 337,355 + +0.2 337,355 + +0.1 337,402 - -0.0 337,402 - +0.6 337,404 + -1.0 337,409 + -0.1 337,501 + +0.1 337,502 - -0.0 337,527 - -0.2 337,560 - +0.4 337,564 + +0.2 337,568 - -0.6 337,568 - +1.5 337,610 - -0.0 337,610 - -1.1 337,610 - -1.1 337,615 - +0.1 337,616 + +0.9 337,644 + -0.6 337,645 - -0.4 337,658 + -0.5 337,659 - -1.7 337,664 - -2.0 337,965 + BACOVA_02853 0.39 -1.4 338,032 + BACOVA_02853 0.47 -0.8 338,077 - BACOVA_02853 0.53 +0.4 338,081 - BACOVA_02853 0.53 -2.8 338,081 - BACOVA_02853 0.53 -0.6 338,084 - BACOVA_02853 0.54 -0.9 338,086 + BACOVA_02853 0.54 +0.2 338,118 - BACOVA_02853 0.58 -0.4 338,251 + BACOVA_02853 0.75 -2.3 338,251 + BACOVA_02853 0.75 -1.6 338,252 - BACOVA_02853 0.76 -1.4 338,252 - BACOVA_02853 0.76 -2.0 338,254 + BACOVA_02853 0.76 -1.9 338,322 + BACOVA_02853 0.85 -3.6 338,324 + BACOVA_02853 0.85 -0.5 338,326 + BACOVA_02853 0.85 -2.2 338,326 + BACOVA_02853 0.85 -1.9 338,327 - BACOVA_02853 0.85 -1.9 338,383 - -2.0 338,389 + -1.9 338,417 - -1.5 338,417 - -1.8 338,435 + -0.2 338,444 - +0.3 338,462 + -0.3 338,463 - +0.0 338,476 - +0.3 338,479 - -0.8 338,496 + -1.2 338,497 - +0.3 338,497 - -0.7 338,529 - +1.2 338,531 - +0.1 338,537 + +1.2 338,542 + -1.5 338,543 - +0.1
Or see this region's nucleotide sequence