Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02745 and BACOVA_02746 are separated by 150 nucleotides BACOVA_02746 and BACOVA_02747 are separated by 1 nucleotides BACOVA_02747 and BACOVA_02748 are separated by 121 nucleotides BACOVA_02748 and BACOVA_02749 are separated by 90 nucleotides BACOVA_02749 and BACOVA_02750 are separated by 12 nucleotides
BACOVA_02745: BACOVA_02745 - glycosyl hydrolase family 3 N-terminal domain protein, at 186,037 to 188,331
_02745
BACOVA_02746: BACOVA_02746 - hypothetical protein, at 188,482 to 188,673
_02746
BACOVA_02747: BACOVA_02747 - hypothetical protein, at 188,675 to 188,809
_02747
BACOVA_02748: BACOVA_02748 - hypothetical protein, at 188,931 to 190,328
_02748
BACOVA_02749: BACOVA_02749 - hypothetical protein, at 190,419 to 191,111
_02749
BACOVA_02750: BACOVA_02750 - hypothetical protein, at 191,124 to 192,314
_02750
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.936 kb on + strand, within BACOVA_02745 at 187.944 kb on - strand, within BACOVA_02745 at 187.991 kb on - strand, within BACOVA_02745 at 188.073 kb on - strand, within BACOVA_02745 at 188.073 kb on - strand, within BACOVA_02745 at 188.208 kb on + strand at 188.217 kb on - strand at 188.217 kb on - strand at 188.217 kb on - strand at 188.317 kb on - strand at 188.319 kb on + strand at 188.320 kb on - strand at 188.320 kb on - strand at 188.321 kb on + strand at 188.321 kb on + strand at 188.330 kb on - strand at 188.348 kb on - strand at 188.348 kb on - strand at 188.395 kb on + strand at 188.395 kb on + strand at 188.395 kb on + strand at 188.396 kb on - strand at 188.396 kb on - strand at 188.396 kb on - strand at 188.396 kb on - strand at 188.398 kb on - strand at 188.441 kb on + strand at 188.476 kb on + strand at 188.554 kb on - strand, within BACOVA_02746 at 188.554 kb on - strand, within BACOVA_02746 at 188.583 kb on - strand, within BACOVA_02746 at 188.584 kb on - strand, within BACOVA_02746 at 188.620 kb on + strand, within BACOVA_02746 at 188.632 kb on - strand, within BACOVA_02746 at 188.632 kb on - strand, within BACOVA_02746 at 188.692 kb on + strand, within BACOVA_02747 at 188.696 kb on + strand, within BACOVA_02747 at 188.717 kb on + strand, within BACOVA_02747 at 188.717 kb on + strand, within BACOVA_02747 at 188.727 kb on + strand, within BACOVA_02747 at 188.734 kb on - strand, within BACOVA_02747 at 188.781 kb on - strand, within BACOVA_02747 at 188.794 kb on - strand, within BACOVA_02747 at 188.857 kb on - strand at 188.857 kb on - strand at 188.896 kb on + strand at 188.896 kb on + strand at 188.897 kb on - strand at 188.903 kb on + strand at 188.903 kb on + strand at 188.904 kb on - strand at 188.904 kb on - strand at 188.906 kb on - strand at 188.994 kb on + strand at 188.994 kb on + strand at 188.999 kb on - strand at 189.005 kb on + strand at 189.008 kb on - strand at 189.013 kb on + strand at 189.014 kb on - strand at 189.030 kb on + strand at 189.047 kb on + strand at 189.048 kb on - strand at 189.054 kb on + strand at 189.055 kb on - strand at 189.057 kb on - strand at 189.057 kb on - strand at 189.082 kb on - strand, within BACOVA_02748 at 189.163 kb on + strand, within BACOVA_02748 at 189.164 kb on - strand, within BACOVA_02748 at 189.179 kb on + strand, within BACOVA_02748 at 189.180 kb on - strand, within BACOVA_02748 at 189.197 kb on + strand, within BACOVA_02748 at 189.236 kb on + strand, within BACOVA_02748 at 189.239 kb on - strand, within BACOVA_02748 at 189.245 kb on + strand, within BACOVA_02748 at 189.246 kb on - strand, within BACOVA_02748 at 189.248 kb on - strand, within BACOVA_02748 at 189.251 kb on + strand, within BACOVA_02748 at 189.251 kb on + strand, within BACOVA_02748 at 189.252 kb on - strand, within BACOVA_02748 at 189.252 kb on - strand, within BACOVA_02748 at 189.277 kb on + strand, within BACOVA_02748 at 189.278 kb on - strand, within BACOVA_02748 at 189.278 kb on - strand, within BACOVA_02748 at 189.373 kb on + strand, within BACOVA_02748 at 189.391 kb on - strand, within BACOVA_02748 at 189.396 kb on + strand, within BACOVA_02748 at 189.396 kb on + strand, within BACOVA_02748 at 189.437 kb on + strand, within BACOVA_02748 at 189.437 kb on + strand, within BACOVA_02748 at 189.454 kb on - strand, within BACOVA_02748 at 189.459 kb on + strand, within BACOVA_02748 at 189.463 kb on + strand, within BACOVA_02748 at 189.463 kb on + strand, within BACOVA_02748 at 189.466 kb on + strand, within BACOVA_02748 at 189.466 kb on + strand, within BACOVA_02748 at 189.467 kb on - strand, within BACOVA_02748 at 189.494 kb on + strand, within BACOVA_02748 at 189.497 kb on + strand, within BACOVA_02748 at 189.498 kb on - strand, within BACOVA_02748 at 189.581 kb on + strand, within BACOVA_02748 at 189.582 kb on - strand, within BACOVA_02748 at 189.624 kb on - strand, within BACOVA_02748 at 189.624 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.672 kb on + strand, within BACOVA_02748 at 189.674 kb on + strand, within BACOVA_02748 at 189.674 kb on + strand, within BACOVA_02748 at 189.801 kb on - strand, within BACOVA_02748 at 189.801 kb on - strand, within BACOVA_02748 at 189.801 kb on - strand, within BACOVA_02748 at 189.893 kb on + strand, within BACOVA_02748 at 189.893 kb on + strand, within BACOVA_02748 at 189.893 kb on + strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.895 kb on + strand, within BACOVA_02748 at 189.895 kb on + strand, within BACOVA_02748 at 189.931 kb on - strand, within BACOVA_02748 at 189.935 kb on - strand, within BACOVA_02748 at 189.946 kb on + strand, within BACOVA_02748 at 189.990 kb on - strand, within BACOVA_02748 at 189.992 kb on + strand, within BACOVA_02748 at 190.009 kb on - strand, within BACOVA_02748 at 190.038 kb on + strand, within BACOVA_02748 at 190.039 kb on - strand, within BACOVA_02748 at 190.071 kb on - strand, within BACOVA_02748 at 190.073 kb on + strand, within BACOVA_02748 at 190.073 kb on + strand, within BACOVA_02748 at 190.073 kb on + strand, within BACOVA_02748 at 190.074 kb on - strand, within BACOVA_02748 at 190.074 kb on - strand, within BACOVA_02748 at 190.075 kb on + strand, within BACOVA_02748 at 190.097 kb on + strand, within BACOVA_02748 at 190.098 kb on - strand, within BACOVA_02748 at 190.132 kb on - strand, within BACOVA_02748 at 190.132 kb on - strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.144 kb on + strand, within BACOVA_02748 at 190.175 kb on + strand, within BACOVA_02748 at 190.212 kb on + strand at 190.233 kb on + strand at 190.238 kb on + strand at 190.239 kb on - strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.254 kb on - strand at 190.290 kb on - strand at 190.290 kb on - strand at 190.311 kb on + strand at 190.315 kb on - strand at 190.330 kb on + strand at 190.404 kb on + strand at 190.404 kb on + strand at 190.405 kb on - strand at 190.405 kb on - strand at 190.420 kb on + strand at 190.421 kb on - strand at 190.423 kb on - strand at 190.423 kb on - strand at 190.458 kb on + strand at 190.459 kb on - strand at 190.459 kb on - strand at 190.481 kb on - strand at 190.488 kb on - strand at 190.488 kb on - strand at 190.492 kb on + strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.517 kb on + strand, within BACOVA_02749 at 190.518 kb on - strand, within BACOVA_02749 at 190.553 kb on + strand, within BACOVA_02749 at 190.560 kb on - strand, within BACOVA_02749 at 190.592 kb on + strand, within BACOVA_02749 at 190.625 kb on + strand, within BACOVA_02749 at 190.628 kb on + strand, within BACOVA_02749 at 190.629 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.660 kb on - strand, within BACOVA_02749 at 190.670 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.720 kb on + strand, within BACOVA_02749 at 190.742 kb on - strand, within BACOVA_02749 at 190.763 kb on + strand, within BACOVA_02749 at 190.784 kb on + strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.808 kb on + strand, within BACOVA_02749 at 190.833 kb on + strand, within BACOVA_02749 at 190.848 kb on + strand, within BACOVA_02749 at 190.869 kb on - strand, within BACOVA_02749 at 190.905 kb on + strand, within BACOVA_02749 at 190.983 kb on - strand, within BACOVA_02749 at 191.002 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.029 kb on - strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.038 kb on - strand, within BACOVA_02749 at 191.081 kb on + strand at 191.130 kb on - strand at 191.174 kb on + strand at 191.175 kb on - strand at 191.194 kb on - strand at 191.194 kb on - strand at 191.261 kb on + strand, within BACOVA_02750 at 191.261 kb on + strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.292 kb on + strand, within BACOVA_02750 at 191.299 kb on - strand, within BACOVA_02750
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 187,936 + BACOVA_02745 0.83 -1.8 187,944 - BACOVA_02745 0.83 -0.5 187,991 - BACOVA_02745 0.85 -0.2 188,073 - BACOVA_02745 0.89 -1.1 188,073 - BACOVA_02745 0.89 -1.0 188,208 + +0.6 188,217 - +1.8 188,217 - +0.0 188,217 - -0.4 188,317 - +0.2 188,319 + -0.6 188,320 - -0.1 188,320 - -0.4 188,321 + -0.6 188,321 + -0.1 188,330 - +0.1 188,348 - +0.3 188,348 - +0.5 188,395 + -0.5 188,395 + -1.0 188,395 + -0.3 188,396 - -1.1 188,396 - +0.3 188,396 - -0.3 188,396 - -1.1 188,398 - -0.5 188,441 + +0.7 188,476 + +1.3 188,554 - BACOVA_02746 0.38 -0.4 188,554 - BACOVA_02746 0.38 -0.5 188,583 - BACOVA_02746 0.53 -0.8 188,584 - BACOVA_02746 0.53 +0.2 188,620 + BACOVA_02746 0.72 -0.4 188,632 - BACOVA_02746 0.78 +0.0 188,632 - BACOVA_02746 0.78 +0.1 188,692 + BACOVA_02747 0.13 +0.9 188,696 + BACOVA_02747 0.16 +0.6 188,717 + BACOVA_02747 0.31 +0.7 188,717 + BACOVA_02747 0.31 -0.0 188,727 + BACOVA_02747 0.39 -0.8 188,734 - BACOVA_02747 0.44 -0.6 188,781 - BACOVA_02747 0.79 +0.1 188,794 - BACOVA_02747 0.88 +0.6 188,857 - -0.4 188,857 - +0.9 188,896 + -0.2 188,896 + +0.3 188,897 - +0.1 188,903 + -0.6 188,903 + +0.1 188,904 - +0.2 188,904 - +0.6 188,906 - +0.4 188,994 + +0.0 188,994 + -0.2 188,999 - -0.4 189,005 + +0.2 189,008 - +0.4 189,013 + +0.2 189,014 - +0.1 189,030 + -0.6 189,047 + -0.3 189,048 - -0.8 189,054 + -0.3 189,055 - +0.5 189,057 - +1.0 189,057 - -0.2 189,082 - BACOVA_02748 0.11 -0.1 189,163 + BACOVA_02748 0.17 +1.5 189,164 - BACOVA_02748 0.17 +0.8 189,179 + BACOVA_02748 0.18 -0.1 189,180 - BACOVA_02748 0.18 -0.5 189,197 + BACOVA_02748 0.19 +0.1 189,236 + BACOVA_02748 0.22 +0.4 189,239 - BACOVA_02748 0.22 -0.3 189,245 + BACOVA_02748 0.22 -0.5 189,246 - BACOVA_02748 0.23 +0.5 189,248 - BACOVA_02748 0.23 -0.2 189,251 + BACOVA_02748 0.23 -0.3 189,251 + BACOVA_02748 0.23 +0.3 189,252 - BACOVA_02748 0.23 +0.4 189,252 - BACOVA_02748 0.23 -0.2 189,277 + BACOVA_02748 0.25 +0.3 189,278 - BACOVA_02748 0.25 +0.0 189,278 - BACOVA_02748 0.25 +0.3 189,373 + BACOVA_02748 0.32 +0.8 189,391 - BACOVA_02748 0.33 +0.6 189,396 + BACOVA_02748 0.33 +0.3 189,396 + BACOVA_02748 0.33 -0.3 189,437 + BACOVA_02748 0.36 -1.4 189,437 + BACOVA_02748 0.36 -0.6 189,454 - BACOVA_02748 0.37 +0.5 189,459 + BACOVA_02748 0.38 -0.3 189,463 + BACOVA_02748 0.38 +1.2 189,463 + BACOVA_02748 0.38 -0.8 189,466 + BACOVA_02748 0.38 +0.2 189,466 + BACOVA_02748 0.38 +0.0 189,467 - BACOVA_02748 0.38 -0.8 189,494 + BACOVA_02748 0.40 -0.7 189,497 + BACOVA_02748 0.40 -0.8 189,498 - BACOVA_02748 0.41 -0.5 189,581 + BACOVA_02748 0.46 +0.0 189,582 - BACOVA_02748 0.47 +0.4 189,624 - BACOVA_02748 0.50 -1.2 189,624 - BACOVA_02748 0.50 +0.1 189,626 - BACOVA_02748 0.50 -0.4 189,626 - BACOVA_02748 0.50 -0.4 189,626 - BACOVA_02748 0.50 +1.2 189,626 - BACOVA_02748 0.50 -0.4 189,626 - BACOVA_02748 0.50 -0.2 189,672 + BACOVA_02748 0.53 +0.3 189,674 + BACOVA_02748 0.53 +0.8 189,674 + BACOVA_02748 0.53 -0.4 189,801 - BACOVA_02748 0.62 +0.4 189,801 - BACOVA_02748 0.62 -1.1 189,801 - BACOVA_02748 0.62 +0.0 189,893 + BACOVA_02748 0.69 +0.1 189,893 + BACOVA_02748 0.69 +0.1 189,893 + BACOVA_02748 0.69 -1.1 189,894 - BACOVA_02748 0.69 +0.1 189,894 - BACOVA_02748 0.69 -1.0 189,894 - BACOVA_02748 0.69 +0.6 189,894 - BACOVA_02748 0.69 +0.3 189,895 + BACOVA_02748 0.69 +0.3 189,895 + BACOVA_02748 0.69 -0.5 189,931 - BACOVA_02748 0.72 -0.3 189,935 - BACOVA_02748 0.72 -0.1 189,946 + BACOVA_02748 0.73 +0.3 189,990 - BACOVA_02748 0.76 +0.4 189,992 + BACOVA_02748 0.76 -1.7 190,009 - BACOVA_02748 0.77 +0.6 190,038 + BACOVA_02748 0.79 +0.2 190,039 - BACOVA_02748 0.79 +1.1 190,071 - BACOVA_02748 0.82 -0.4 190,073 + BACOVA_02748 0.82 -0.2 190,073 + BACOVA_02748 0.82 -0.3 190,073 + BACOVA_02748 0.82 +0.5 190,074 - BACOVA_02748 0.82 -0.5 190,074 - BACOVA_02748 0.82 -2.1 190,075 + BACOVA_02748 0.82 -0.5 190,097 + BACOVA_02748 0.83 -1.1 190,098 - BACOVA_02748 0.83 -1.8 190,132 - BACOVA_02748 0.86 -0.0 190,132 - BACOVA_02748 0.86 -0.8 190,142 + BACOVA_02748 0.87 -0.3 190,142 + BACOVA_02748 0.87 +0.2 190,144 + BACOVA_02748 0.87 +0.5 190,175 + BACOVA_02748 0.89 +0.0 190,212 + +0.1 190,233 + -1.5 190,238 + +1.0 190,239 - +0.1 190,250 + -0.0 190,250 + -0.3 190,250 + +0.1 190,254 - -0.2 190,290 - -0.9 190,290 - +0.2 190,311 + +0.7 190,315 - +1.8 190,330 + -0.2 190,404 + +0.2 190,404 + -0.6 190,405 - -0.5 190,405 - +0.3 190,420 + -0.0 190,421 - -0.3 190,423 - +0.4 190,423 - +1.4 190,458 + -1.6 190,459 - -0.1 190,459 - -0.2 190,481 - -0.2 190,488 - -0.7 190,488 - -0.2 190,492 + BACOVA_02749 0.11 +0.6 190,493 - BACOVA_02749 0.11 -1.8 190,493 - BACOVA_02749 0.11 -0.6 190,517 + BACOVA_02749 0.14 +0.7 190,518 - BACOVA_02749 0.14 +1.0 190,553 + BACOVA_02749 0.19 +1.3 190,560 - BACOVA_02749 0.20 -0.2 190,592 + BACOVA_02749 0.25 -0.6 190,625 + BACOVA_02749 0.30 -0.4 190,628 + BACOVA_02749 0.30 -0.5 190,629 - BACOVA_02749 0.30 -1.1 190,659 - BACOVA_02749 0.35 +0.0 190,659 - BACOVA_02749 0.35 -0.9 190,660 - BACOVA_02749 0.35 +0.6 190,670 + BACOVA_02749 0.36 -1.0 190,708 + BACOVA_02749 0.42 +0.2 190,708 + BACOVA_02749 0.42 -0.1 190,720 + BACOVA_02749 0.43 -0.1 190,742 - BACOVA_02749 0.47 +0.2 190,763 + BACOVA_02749 0.50 -0.5 190,784 + BACOVA_02749 0.53 -0.2 190,791 - BACOVA_02749 0.54 +0.2 190,791 - BACOVA_02749 0.54 +1.0 190,808 + BACOVA_02749 0.56 -0.8 190,833 + BACOVA_02749 0.60 -1.5 190,848 + BACOVA_02749 0.62 -0.6 190,869 - BACOVA_02749 0.65 -0.9 190,905 + BACOVA_02749 0.70 -0.1 190,983 - BACOVA_02749 0.81 -0.1 191,002 + BACOVA_02749 0.84 +0.2 191,028 + BACOVA_02749 0.88 +0.4 191,028 + BACOVA_02749 0.88 -0.7 191,029 - BACOVA_02749 0.88 -0.5 191,030 + BACOVA_02749 0.88 -0.4 191,030 + BACOVA_02749 0.88 -0.0 191,031 - BACOVA_02749 0.88 -0.4 191,031 - BACOVA_02749 0.88 -1.8 191,031 - BACOVA_02749 0.88 -1.5 191,038 - BACOVA_02749 0.89 -0.9 191,081 + +0.6 191,130 - +0.0 191,174 + +1.8 191,175 - -0.4 191,194 - -0.8 191,194 - -0.4 191,261 + BACOVA_02750 0.12 -0.1 191,261 + BACOVA_02750 0.12 -0.9 191,262 - BACOVA_02750 0.12 -0.3 191,262 - BACOVA_02750 0.12 -1.1 191,292 + BACOVA_02750 0.14 -0.5 191,299 - BACOVA_02750 0.15 -1.0
Or see this region's nucleotide sequence