Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00385

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00383 and BACOVA_00384 overlap by 4 nucleotidesBACOVA_00384 and BACOVA_00385 are separated by 86 nucleotidesBACOVA_00385 and BACOVA_00386 are separated by 0 nucleotides BACOVA_00383: BACOVA_00383 - hypothetical protein, at 6,642 to 7,769 _00383 BACOVA_00384: BACOVA_00384 - hypothetical protein, at 7,766 to 7,948 _00384 BACOVA_00385: BACOVA_00385 - hypothetical protein, at 8,035 to 10,191 _00385 BACOVA_00386: BACOVA_00386 - hypothetical protein, at 10,192 to 12,351 _00386 Position (kb) 8 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 7.051 kb on - strand, within BACOVA_00383at 7.051 kb on - strand, within BACOVA_00383at 7.061 kb on - strand, within BACOVA_00383at 7.190 kb on + strand, within BACOVA_00383at 7.190 kb on + strand, within BACOVA_00383at 7.191 kb on - strand, within BACOVA_00383at 7.191 kb on - strand, within BACOVA_00383at 7.263 kb on + strand, within BACOVA_00383at 7.264 kb on - strand, within BACOVA_00383at 7.264 kb on - strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.276 kb on - strand, within BACOVA_00383at 7.276 kb on - strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.278 kb on - strand, within BACOVA_00383at 7.278 kb on - strand, within BACOVA_00383at 7.342 kb on + strand, within BACOVA_00383at 7.343 kb on - strand, within BACOVA_00383at 7.414 kb on + strand, within BACOVA_00383at 7.451 kb on + strand, within BACOVA_00383at 7.520 kb on - strand, within BACOVA_00383at 7.535 kb on + strand, within BACOVA_00383at 7.535 kb on + strand, within BACOVA_00383at 7.536 kb on - strand, within BACOVA_00383at 7.585 kb on + strand, within BACOVA_00383at 7.586 kb on - strand, within BACOVA_00383at 7.670 kb on + strandat 7.751 kb on + strandat 7.755 kb on + strandat 7.756 kb on - strandat 7.818 kb on - strand, within BACOVA_00384at 7.818 kb on - strand, within BACOVA_00384at 7.820 kb on + strand, within BACOVA_00384at 7.840 kb on + strand, within BACOVA_00384at 7.840 kb on + strand, within BACOVA_00384at 7.849 kb on + strand, within BACOVA_00384at 7.850 kb on - strand, within BACOVA_00384at 7.850 kb on - strand, within BACOVA_00384at 7.899 kb on + strand, within BACOVA_00384at 7.900 kb on - strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.925 kb on + strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.926 kb on - strand, within BACOVA_00384at 7.927 kb on + strand, within BACOVA_00384at 7.944 kb on + strandat 7.979 kb on + strandat 8.036 kb on + strandat 8.036 kb on + strandat 8.062 kb on - strandat 8.101 kb on - strandat 8.102 kb on + strandat 8.245 kb on - strandat 8.248 kb on - strandat 8.257 kb on + strand, within BACOVA_00385at 8.316 kb on + strand, within BACOVA_00385at 8.317 kb on - strand, within BACOVA_00385at 8.317 kb on - strand, within BACOVA_00385at 8.317 kb on - strand, within BACOVA_00385at 8.318 kb on + strand, within BACOVA_00385at 8.319 kb on - strand, within BACOVA_00385at 8.320 kb on + strand, within BACOVA_00385at 8.321 kb on - strand, within BACOVA_00385at 8.450 kb on + strand, within BACOVA_00385at 8.451 kb on - strand, within BACOVA_00385at 8.467 kb on - strand, within BACOVA_00385at 8.533 kb on + strand, within BACOVA_00385at 8.539 kb on - strand, within BACOVA_00385at 8.552 kb on + strand, within BACOVA_00385at 8.613 kb on - strand, within BACOVA_00385at 8.620 kb on + strand, within BACOVA_00385at 8.623 kb on + strand, within BACOVA_00385at 8.623 kb on + strand, within BACOVA_00385at 8.648 kb on + strand, within BACOVA_00385at 8.667 kb on + strand, within BACOVA_00385at 8.798 kb on + strand, within BACOVA_00385at 8.798 kb on + strand, within BACOVA_00385at 8.799 kb on - strand, within BACOVA_00385at 8.871 kb on - strand, within BACOVA_00385at 8.871 kb on - strand, within BACOVA_00385at 8.874 kb on + strand, within BACOVA_00385at 8.973 kb on + strand, within BACOVA_00385at 9.021 kb on - strand, within BACOVA_00385at 9.021 kb on - strand, within BACOVA_00385at 9.022 kb on + strand, within BACOVA_00385at 9.023 kb on - strand, within BACOVA_00385at 9.043 kb on + strand, within BACOVA_00385at 9.043 kb on + strand, within BACOVA_00385at 9.112 kb on + strand, within BACOVA_00385at 9.113 kb on - strand, within BACOVA_00385at 9.113 kb on - strand, within BACOVA_00385at 9.113 kb on - strand, within BACOVA_00385at 9.146 kb on - strand, within BACOVA_00385at 9.264 kb on + strand, within BACOVA_00385at 9.349 kb on - strand, within BACOVA_00385at 9.349 kb on - strand, within BACOVA_00385at 9.350 kb on + strand, within BACOVA_00385at 9.459 kb on + strand, within BACOVA_00385at 9.464 kb on + strand, within BACOVA_00385at 9.465 kb on - strand, within BACOVA_00385at 9.499 kb on - strand, within BACOVA_00385at 9.565 kb on - strand, within BACOVA_00385at 9.608 kb on + strand, within BACOVA_00385at 9.608 kb on + strand, within BACOVA_00385at 9.608 kb on + strand, within BACOVA_00385at 9.683 kb on - strand, within BACOVA_00385at 9.683 kb on - strand, within BACOVA_00385at 9.691 kb on - strand, within BACOVA_00385at 9.719 kb on - strand, within BACOVA_00385at 9.747 kb on - strand, within BACOVA_00385at 9.794 kb on + strand, within BACOVA_00385at 9.847 kb on - strand, within BACOVA_00385at 9.847 kb on - strand, within BACOVA_00385at 9.904 kb on + strand, within BACOVA_00385at 9.909 kb on + strand, within BACOVA_00385at 9.910 kb on - strand, within BACOVA_00385at 9.913 kb on - strand, within BACOVA_00385at 9.975 kb on + strand, within BACOVA_00385at 10.043 kb on + strandat 10.174 kb on + strandat 10.174 kb on + strandat 10.175 kb on - strandat 10.175 kb on - strandat 10.199 kb on - strandat 10.220 kb on - strandat 10.220 kb on - strandat 10.228 kb on + strandat 10.263 kb on - strandat 10.278 kb on + strandat 10.281 kb on + strandat 10.282 kb on - strandat 10.282 kb on - strandat 10.437 kb on + strand, within BACOVA_00386at 10.437 kb on + strand, within BACOVA_00386at 10.438 kb on - strand, within BACOVA_00386at 10.438 kb on - strand, within BACOVA_00386at 10.438 kb on - strand, within BACOVA_00386at 10.545 kb on + strand, within BACOVA_00386at 10.545 kb on + strand, within BACOVA_00386at 10.561 kb on - strand, within BACOVA_00386at 10.572 kb on - strand, within BACOVA_00386at 10.572 kb on - strand, within BACOVA_00386at 10.572 kb on - strand, within BACOVA_00386at 10.595 kb on + strand, within BACOVA_00386at 10.595 kb on + strand, within BACOVA_00386at 10.595 kb on + strand, within BACOVA_00386at 10.609 kb on - strand, within BACOVA_00386at 10.613 kb on + strand, within BACOVA_00386at 10.614 kb on - strand, within BACOVA_00386at 10.687 kb on - strand, within BACOVA_00386at 10.688 kb on + strand, within BACOVA_00386at 10.688 kb on + strand, within BACOVA_00386at 10.688 kb on + strand, within BACOVA_00386at 10.709 kb on - strand, within BACOVA_00386at 10.722 kb on + strand, within BACOVA_00386at 10.765 kb on - strand, within BACOVA_00386at 10.869 kb on - strand, within BACOVA_00386at 10.869 kb on - strand, within BACOVA_00386at 10.872 kb on + strand, within BACOVA_00386at 10.873 kb on - strand, within BACOVA_00386at 10.873 kb on - strand, within BACOVA_00386at 10.873 kb on - strand, within BACOVA_00386at 10.923 kb on + strand, within BACOVA_00386at 10.929 kb on + strand, within BACOVA_00386at 10.929 kb on + strand, within BACOVA_00386at 10.964 kb on + strand, within BACOVA_00386at 10.964 kb on + strand, within BACOVA_00386at 10.964 kb on + strand, within BACOVA_00386at 10.966 kb on + strand, within BACOVA_00386at 10.966 kb on + strand, within BACOVA_00386at 10.966 kb on + strand, within BACOVA_00386at 10.966 kb on + strand, within BACOVA_00386at 10.966 kb on + strand, within BACOVA_00386at 11.013 kb on - strand, within BACOVA_00386at 11.022 kb on + strand, within BACOVA_00386at 11.036 kb on + strand, within BACOVA_00386at 11.036 kb on + strand, within BACOVA_00386at 11.037 kb on - strand, within BACOVA_00386at 11.136 kb on + strand, within BACOVA_00386at 11.169 kb on - strand, within BACOVA_00386at 11.169 kb on - strand, within BACOVA_00386

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
remove
7,051 - BACOVA_00383 0.36 -1.8
7,051 - BACOVA_00383 0.36 +0.3
7,061 - BACOVA_00383 0.37 +0.7
7,190 + BACOVA_00383 0.49 -1.0
7,190 + BACOVA_00383 0.49 -1.2
7,191 - BACOVA_00383 0.49 -0.5
7,191 - BACOVA_00383 0.49 +1.9
7,263 + BACOVA_00383 0.55 -0.1
7,264 - BACOVA_00383 0.55 +0.2
7,264 - BACOVA_00383 0.55 +1.5
7,275 + BACOVA_00383 0.56 +0.1
7,275 + BACOVA_00383 0.56 +0.6
7,275 + BACOVA_00383 0.56 -0.4
7,276 - BACOVA_00383 0.56 +0.6
7,276 - BACOVA_00383 0.56 -0.4
7,277 + BACOVA_00383 0.56 +0.3
7,277 + BACOVA_00383 0.56 -0.9
7,277 + BACOVA_00383 0.56 -1.7
7,278 - BACOVA_00383 0.56 -0.5
7,278 - BACOVA_00383 0.56 -0.1
7,342 + BACOVA_00383 0.62 +0.9
7,343 - BACOVA_00383 0.62 -2.0
7,414 + BACOVA_00383 0.68 +1.1
7,451 + BACOVA_00383 0.72 -1.2
7,520 - BACOVA_00383 0.78 -0.2
7,535 + BACOVA_00383 0.79 -0.8
7,535 + BACOVA_00383 0.79 -1.0
7,536 - BACOVA_00383 0.79 +0.8
7,585 + BACOVA_00383 0.84 +0.4
7,586 - BACOVA_00383 0.84 -0.9
7,670 + +1.5
7,751 + +0.4
7,755 + -0.5
7,756 - -0.2
7,818 - BACOVA_00384 0.28 -1.2
7,818 - BACOVA_00384 0.28 -0.8
7,820 + BACOVA_00384 0.30 +0.2
7,840 + BACOVA_00384 0.40 +0.6
7,840 + BACOVA_00384 0.40 -0.7
7,849 + BACOVA_00384 0.45 +0.1
7,850 - BACOVA_00384 0.46 -0.3
7,850 - BACOVA_00384 0.46 +1.0
7,899 + BACOVA_00384 0.73 +0.6
7,900 - BACOVA_00384 0.73 -0.7
7,925 + BACOVA_00384 0.87 +1.1
7,925 + BACOVA_00384 0.87 +0.1
7,925 + BACOVA_00384 0.87 -0.0
7,925 + BACOVA_00384 0.87 +0.3
7,925 + BACOVA_00384 0.87 +1.7
7,926 - BACOVA_00384 0.87 -0.1
7,926 - BACOVA_00384 0.87 +1.0
7,926 - BACOVA_00384 0.87 +0.9
7,926 - BACOVA_00384 0.87 +0.4
7,927 + BACOVA_00384 0.88 +0.5
7,944 + -2.1
7,979 + +1.9
8,036 + +0.4
8,036 + +0.4
8,062 - -0.4
8,101 - +0.1
8,102 + +0.3
8,245 - +0.4
8,248 - -0.7
8,257 + BACOVA_00385 0.10 +0.6
8,316 + BACOVA_00385 0.13 -1.8
8,317 - BACOVA_00385 0.13 +0.9
8,317 - BACOVA_00385 0.13 +0.2
8,317 - BACOVA_00385 0.13 -0.6
8,318 + BACOVA_00385 0.13 -0.2
8,319 - BACOVA_00385 0.13 +0.6
8,320 + BACOVA_00385 0.13 -0.1
8,321 - BACOVA_00385 0.13 -0.8
8,450 + BACOVA_00385 0.19 -0.3
8,451 - BACOVA_00385 0.19 -0.3
8,467 - BACOVA_00385 0.20 +1.0
8,533 + BACOVA_00385 0.23 -0.5
8,539 - BACOVA_00385 0.23 +0.5
8,552 + BACOVA_00385 0.24 -0.5
8,613 - BACOVA_00385 0.27 -0.7
8,620 + BACOVA_00385 0.27 +0.4
8,623 + BACOVA_00385 0.27 -0.3
8,623 + BACOVA_00385 0.27 -1.5
8,648 + BACOVA_00385 0.28 +1.1
8,667 + BACOVA_00385 0.29 -0.9
8,798 + BACOVA_00385 0.35 -0.8
8,798 + BACOVA_00385 0.35 -0.7
8,799 - BACOVA_00385 0.35 -0.9
8,871 - BACOVA_00385 0.39 +0.6
8,871 - BACOVA_00385 0.39 -0.1
8,874 + BACOVA_00385 0.39 -0.1
8,973 + BACOVA_00385 0.43 +2.4
9,021 - BACOVA_00385 0.46 -1.8
9,021 - BACOVA_00385 0.46 -0.8
9,022 + BACOVA_00385 0.46 -0.8
9,023 - BACOVA_00385 0.46 -0.2
9,043 + BACOVA_00385 0.47 +0.5
9,043 + BACOVA_00385 0.47 -0.7
9,112 + BACOVA_00385 0.50 -1.3
9,113 - BACOVA_00385 0.50 -0.2
9,113 - BACOVA_00385 0.50 -0.3
9,113 - BACOVA_00385 0.50 +0.2
9,146 - BACOVA_00385 0.52 +0.1
9,264 + BACOVA_00385 0.57 -0.1
9,349 - BACOVA_00385 0.61 +0.2
9,349 - BACOVA_00385 0.61 -0.4
9,350 + BACOVA_00385 0.61 -0.9
9,459 + BACOVA_00385 0.66 +0.3
9,464 + BACOVA_00385 0.66 -1.0
9,465 - BACOVA_00385 0.66 +0.5
9,499 - BACOVA_00385 0.68 -0.1
9,565 - BACOVA_00385 0.71 -0.8
9,608 + BACOVA_00385 0.73 +0.1
9,608 + BACOVA_00385 0.73 -0.3
9,608 + BACOVA_00385 0.73 +1.1
9,683 - BACOVA_00385 0.76 +0.4
9,683 - BACOVA_00385 0.76 -0.3
9,691 - BACOVA_00385 0.77 -1.1
9,719 - BACOVA_00385 0.78 -0.0
9,747 - BACOVA_00385 0.79 +0.7
9,794 + BACOVA_00385 0.82 +0.4
9,847 - BACOVA_00385 0.84 +0.2
9,847 - BACOVA_00385 0.84 +0.2
9,904 + BACOVA_00385 0.87 +0.5
9,909 + BACOVA_00385 0.87 +0.6
9,910 - BACOVA_00385 0.87 +0.4
9,913 - BACOVA_00385 0.87 -0.5
9,975 + BACOVA_00385 0.90 -0.3
10,043 + -1.3
10,174 + +1.2
10,174 + -1.3
10,175 - +0.7
10,175 - +0.3
10,199 - +0.3
10,220 - -1.5
10,220 - +1.2
10,228 + -0.8
10,263 - -1.0
10,278 + -1.8
10,281 + -0.7
10,282 - +0.9
10,282 - +0.3
10,437 + BACOVA_00386 0.11 +0.3
10,437 + BACOVA_00386 0.11 -1.5
10,438 - BACOVA_00386 0.11 -0.8
10,438 - BACOVA_00386 0.11 -0.2
10,438 - BACOVA_00386 0.11 +1.7
10,545 + BACOVA_00386 0.16 +0.9
10,545 + BACOVA_00386 0.16 +1.1
10,561 - BACOVA_00386 0.17 +1.3
10,572 - BACOVA_00386 0.18 +0.5
10,572 - BACOVA_00386 0.18 -0.3
10,572 - BACOVA_00386 0.18 -1.5
10,595 + BACOVA_00386 0.19 -0.4
10,595 + BACOVA_00386 0.19 -0.8
10,595 + BACOVA_00386 0.19 +0.1
10,609 - BACOVA_00386 0.19 +0.6
10,613 + BACOVA_00386 0.19 +0.3
10,614 - BACOVA_00386 0.20 +0.2
10,687 - BACOVA_00386 0.23 +0.8
10,688 + BACOVA_00386 0.23 -0.1
10,688 + BACOVA_00386 0.23 +0.7
10,688 + BACOVA_00386 0.23 -1.4
10,709 - BACOVA_00386 0.24 -0.3
10,722 + BACOVA_00386 0.25 -0.7
10,765 - BACOVA_00386 0.27 -2.0
10,869 - BACOVA_00386 0.31 -1.4
10,869 - BACOVA_00386 0.31 -0.3
10,872 + BACOVA_00386 0.31 +0.6
10,873 - BACOVA_00386 0.32 -1.3
10,873 - BACOVA_00386 0.32 -1.4
10,873 - BACOVA_00386 0.32 +0.5
10,923 + BACOVA_00386 0.34 +0.3
10,929 + BACOVA_00386 0.34 +0.4
10,929 + BACOVA_00386 0.34 -0.7
10,964 + BACOVA_00386 0.36 +1.6
10,964 + BACOVA_00386 0.36 -0.3
10,964 + BACOVA_00386 0.36 -1.1
10,966 + BACOVA_00386 0.36 -0.9
10,966 + BACOVA_00386 0.36 +0.6
10,966 + BACOVA_00386 0.36 -0.5
10,966 + BACOVA_00386 0.36 +0.7
10,966 + BACOVA_00386 0.36 -0.6
11,013 - BACOVA_00386 0.38 -0.1
11,022 + BACOVA_00386 0.38 +0.2
11,036 + BACOVA_00386 0.39 -0.5
11,036 + BACOVA_00386 0.39 -1.2
11,037 - BACOVA_00386 0.39 +0.6
11,136 + BACOVA_00386 0.44 +0.7
11,169 - BACOVA_00386 0.45 +0.6
11,169 - BACOVA_00386 0.45 -1.1

Or see this region's nucleotide sequence