Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00143 and BACOVA_00144 are separated by 241 nucleotides BACOVA_00144 and BACOVA_00145 overlap by 29 nucleotides BACOVA_00145 and BACOVA_00146 are separated by 102 nucleotides BACOVA_00146 and BACOVA_00147 are separated by 20 nucleotides
BACOVA_00143: BACOVA_00143 - hypothetical protein, at 12,248 to 13,489
_00143
BACOVA_00144: BACOVA_00144 - hypothetical protein, at 13,731 to 14,279
_00144
BACOVA_00145: BACOVA_00145 - hypothetical protein, at 14,251 to 14,973
_00145
BACOVA_00146: BACOVA_00146 - hypothetical protein, at 15,076 to 15,711
_00146
BACOVA_00147: BACOVA_00147 - hypothetical protein, at 15,732 to 16,223
_00147
Position (kb) 14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 13.266 kb on + strand, within BACOVA_00143 at 13.352 kb on + strand, within BACOVA_00143 at 13.370 kb on + strand at 13.373 kb on - strand at 13.373 kb on - strand at 13.376 kb on + strand at 13.376 kb on + strand at 13.377 kb on - strand at 13.379 kb on + strand at 13.380 kb on - strand at 13.408 kb on + strand at 13.436 kb on + strand at 13.436 kb on + strand at 13.437 kb on - strand at 13.437 kb on - strand at 13.488 kb on - strand at 13.510 kb on + strand at 13.557 kb on + strand at 13.558 kb on - strand at 13.591 kb on - strand at 13.597 kb on + strand at 13.658 kb on + strand at 13.689 kb on + strand at 13.689 kb on + strand at 13.689 kb on + strand at 13.690 kb on - strand at 13.718 kb on + strand at 13.718 kb on + strand at 13.719 kb on - strand at 13.733 kb on - strand at 13.733 kb on - strand at 13.740 kb on - strand at 13.804 kb on + strand, within BACOVA_00144 at 13.804 kb on + strand, within BACOVA_00144 at 13.809 kb on + strand, within BACOVA_00144 at 13.852 kb on + strand, within BACOVA_00144 at 13.853 kb on - strand, within BACOVA_00144 at 13.853 kb on - strand, within BACOVA_00144 at 13.886 kb on + strand, within BACOVA_00144 at 13.886 kb on + strand, within BACOVA_00144 at 13.889 kb on + strand, within BACOVA_00144 at 13.918 kb on + strand, within BACOVA_00144 at 13.922 kb on + strand, within BACOVA_00144 at 13.925 kb on + strand, within BACOVA_00144 at 13.943 kb on - strand, within BACOVA_00144 at 13.943 kb on - strand, within BACOVA_00144 at 13.960 kb on + strand, within BACOVA_00144 at 13.960 kb on + strand, within BACOVA_00144 at 13.961 kb on - strand, within BACOVA_00144 at 13.961 kb on - strand, within BACOVA_00144 at 13.961 kb on - strand, within BACOVA_00144 at 13.964 kb on + strand, within BACOVA_00144 at 13.964 kb on + strand, within BACOVA_00144 at 13.964 kb on + strand, within BACOVA_00144 at 13.965 kb on - strand, within BACOVA_00144 at 13.965 kb on - strand, within BACOVA_00144 at 13.965 kb on - strand, within BACOVA_00144 at 13.983 kb on + strand, within BACOVA_00144 at 13.984 kb on - strand, within BACOVA_00144 at 13.989 kb on - strand, within BACOVA_00144 at 13.991 kb on - strand, within BACOVA_00144 at 13.991 kb on - strand, within BACOVA_00144 at 14.021 kb on + strand, within BACOVA_00144 at 14.031 kb on + strand, within BACOVA_00144 at 14.032 kb on - strand, within BACOVA_00144 at 14.069 kb on - strand, within BACOVA_00144 at 14.094 kb on + strand, within BACOVA_00144 at 14.140 kb on + strand, within BACOVA_00144 at 14.157 kb on + strand, within BACOVA_00144 at 14.158 kb on - strand, within BACOVA_00144 at 14.158 kb on - strand, within BACOVA_00144 at 14.160 kb on + strand, within BACOVA_00144 at 14.170 kb on - strand, within BACOVA_00144 at 14.201 kb on + strand, within BACOVA_00144 at 14.253 kb on - strand at 14.260 kb on - strand at 14.260 kb on - strand at 14.291 kb on - strand at 14.291 kb on - strand at 14.472 kb on + strand, within BACOVA_00145 at 14.473 kb on - strand, within BACOVA_00145 at 14.497 kb on + strand, within BACOVA_00145 at 14.498 kb on - strand, within BACOVA_00145 at 14.599 kb on + strand, within BACOVA_00145 at 14.600 kb on - strand, within BACOVA_00145 at 14.612 kb on + strand, within BACOVA_00145 at 14.612 kb on + strand, within BACOVA_00145 at 14.735 kb on - strand, within BACOVA_00145 at 14.797 kb on - strand, within BACOVA_00145 at 14.801 kb on + strand, within BACOVA_00145 at 14.852 kb on + strand, within BACOVA_00145 at 14.853 kb on - strand, within BACOVA_00145 at 14.853 kb on - strand, within BACOVA_00145 at 14.853 kb on - strand, within BACOVA_00145 at 14.856 kb on + strand, within BACOVA_00145 at 14.856 kb on + strand, within BACOVA_00145 at 14.857 kb on - strand, within BACOVA_00145 at 14.880 kb on - strand, within BACOVA_00145 at 14.880 kb on - strand, within BACOVA_00145 at 14.923 kb on - strand at 14.939 kb on + strand at 14.973 kb on + strand at 14.973 kb on + strand at 15.044 kb on - strand at 15.047 kb on + strand at 15.048 kb on - strand at 15.077 kb on + strand at 15.077 kb on + strand at 15.145 kb on + strand, within BACOVA_00146 at 15.145 kb on + strand, within BACOVA_00146 at 15.146 kb on - strand, within BACOVA_00146 at 15.188 kb on + strand, within BACOVA_00146 at 15.211 kb on - strand, within BACOVA_00146 at 15.234 kb on - strand, within BACOVA_00146 at 15.234 kb on - strand, within BACOVA_00146 at 15.311 kb on + strand, within BACOVA_00146 at 15.312 kb on - strand, within BACOVA_00146 at 15.329 kb on - strand, within BACOVA_00146 at 15.329 kb on - strand, within BACOVA_00146 at 15.397 kb on + strand, within BACOVA_00146 at 15.397 kb on + strand, within BACOVA_00146 at 15.397 kb on + strand, within BACOVA_00146 at 15.397 kb on + strand, within BACOVA_00146 at 15.398 kb on - strand, within BACOVA_00146 at 15.398 kb on - strand, within BACOVA_00146 at 15.398 kb on - strand, within BACOVA_00146 at 15.399 kb on + strand, within BACOVA_00146 at 15.399 kb on + strand, within BACOVA_00146 at 15.400 kb on - strand, within BACOVA_00146 at 15.488 kb on - strand, within BACOVA_00146 at 15.516 kb on + strand, within BACOVA_00146 at 15.519 kb on - strand, within BACOVA_00146 at 15.519 kb on - strand, within BACOVA_00146 at 15.571 kb on - strand, within BACOVA_00146 at 15.646 kb on + strand, within BACOVA_00146 at 15.676 kb on + strand at 15.677 kb on - strand at 15.697 kb on + strand at 15.698 kb on - strand at 15.701 kb on - strand at 15.715 kb on + strand at 15.715 kb on + strand at 15.715 kb on + strand at 15.715 kb on + strand at 15.716 kb on - strand at 15.719 kb on + strand at 15.740 kb on + strand at 15.759 kb on + strand at 15.760 kb on - strand at 15.760 kb on - strand at 15.801 kb on + strand, within BACOVA_00147 at 15.801 kb on + strand, within BACOVA_00147 at 15.864 kb on + strand, within BACOVA_00147 at 15.877 kb on + strand, within BACOVA_00147 at 15.878 kb on - strand, within BACOVA_00147 at 15.940 kb on + strand, within BACOVA_00147 at 15.958 kb on + strand, within BACOVA_00147 at 15.959 kb on - strand, within BACOVA_00147
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/mL (C) remove 13,266 + BACOVA_00143 0.82 +0.7 13,352 + BACOVA_00143 0.89 -1.1 13,370 + +0.3 13,373 - -0.6 13,373 - -0.5 13,376 + -0.3 13,376 + -0.6 13,377 - -0.0 13,379 + -0.8 13,380 - -0.4 13,408 + -0.3 13,436 + -1.7 13,436 + -0.9 13,437 - -2.6 13,437 - -2.5 13,488 - -0.3 13,510 + +0.8 13,557 + -0.2 13,558 - +0.2 13,591 - +1.2 13,597 + +0.6 13,658 + -0.1 13,689 + +0.6 13,689 + +0.5 13,689 + -0.1 13,690 - -2.0 13,718 + -1.0 13,718 + +0.0 13,719 - -0.3 13,733 - -0.8 13,733 - -0.7 13,740 - -0.3 13,804 + BACOVA_00144 0.13 +1.3 13,804 + BACOVA_00144 0.13 +1.9 13,809 + BACOVA_00144 0.14 -1.0 13,852 + BACOVA_00144 0.22 -0.8 13,853 - BACOVA_00144 0.22 +0.4 13,853 - BACOVA_00144 0.22 -1.5 13,886 + BACOVA_00144 0.28 -0.5 13,886 + BACOVA_00144 0.28 +0.3 13,889 + BACOVA_00144 0.29 -1.0 13,918 + BACOVA_00144 0.34 +0.0 13,922 + BACOVA_00144 0.35 -2.1 13,925 + BACOVA_00144 0.35 +0.2 13,943 - BACOVA_00144 0.39 +0.1 13,943 - BACOVA_00144 0.39 -0.1 13,960 + BACOVA_00144 0.42 +0.3 13,960 + BACOVA_00144 0.42 +0.0 13,961 - BACOVA_00144 0.42 -0.0 13,961 - BACOVA_00144 0.42 +0.4 13,961 - BACOVA_00144 0.42 -0.6 13,964 + BACOVA_00144 0.42 +0.5 13,964 + BACOVA_00144 0.42 +1.8 13,964 + BACOVA_00144 0.42 -0.1 13,965 - BACOVA_00144 0.43 +0.2 13,965 - BACOVA_00144 0.43 +0.1 13,965 - BACOVA_00144 0.43 +0.7 13,983 + BACOVA_00144 0.46 -0.3 13,984 - BACOVA_00144 0.46 +1.2 13,989 - BACOVA_00144 0.47 -0.9 13,991 - BACOVA_00144 0.47 +0.6 13,991 - BACOVA_00144 0.47 +0.2 14,021 + BACOVA_00144 0.53 +0.8 14,031 + BACOVA_00144 0.55 +0.2 14,032 - BACOVA_00144 0.55 -0.1 14,069 - BACOVA_00144 0.62 -0.4 14,094 + BACOVA_00144 0.66 -1.5 14,140 + BACOVA_00144 0.74 -0.8 14,157 + BACOVA_00144 0.78 +1.4 14,158 - BACOVA_00144 0.78 -0.2 14,158 - BACOVA_00144 0.78 -0.0 14,160 + BACOVA_00144 0.78 -0.9 14,170 - BACOVA_00144 0.80 -0.9 14,201 + BACOVA_00144 0.86 -0.0 14,253 - -1.0 14,260 - +0.8 14,260 - -0.6 14,291 - -0.8 14,291 - +0.8 14,472 + BACOVA_00145 0.31 +1.1 14,473 - BACOVA_00145 0.31 -0.3 14,497 + BACOVA_00145 0.34 -0.2 14,498 - BACOVA_00145 0.34 -0.1 14,599 + BACOVA_00145 0.48 +1.1 14,600 - BACOVA_00145 0.48 +0.4 14,612 + BACOVA_00145 0.50 -0.5 14,612 + BACOVA_00145 0.50 -0.2 14,735 - BACOVA_00145 0.67 -1.5 14,797 - BACOVA_00145 0.76 +0.0 14,801 + BACOVA_00145 0.76 -0.9 14,852 + BACOVA_00145 0.83 -1.1 14,853 - BACOVA_00145 0.83 -0.4 14,853 - BACOVA_00145 0.83 -1.3 14,853 - BACOVA_00145 0.83 +0.0 14,856 + BACOVA_00145 0.84 +0.7 14,856 + BACOVA_00145 0.84 -1.2 14,857 - BACOVA_00145 0.84 -1.7 14,880 - BACOVA_00145 0.87 +0.8 14,880 - BACOVA_00145 0.87 +1.3 14,923 - -0.6 14,939 + -0.4 14,973 + -0.6 14,973 + +0.1 15,044 - +0.2 15,047 + -0.2 15,048 - -0.7 15,077 + +0.3 15,077 + -3.9 15,145 + BACOVA_00146 0.11 +0.8 15,145 + BACOVA_00146 0.11 +0.8 15,146 - BACOVA_00146 0.11 -0.3 15,188 + BACOVA_00146 0.18 +0.1 15,211 - BACOVA_00146 0.21 -1.7 15,234 - BACOVA_00146 0.25 -0.3 15,234 - BACOVA_00146 0.25 +0.2 15,311 + BACOVA_00146 0.37 -0.6 15,312 - BACOVA_00146 0.37 +0.7 15,329 - BACOVA_00146 0.40 -1.8 15,329 - BACOVA_00146 0.40 -0.2 15,397 + BACOVA_00146 0.50 +0.5 15,397 + BACOVA_00146 0.50 +0.1 15,397 + BACOVA_00146 0.50 -0.1 15,397 + BACOVA_00146 0.50 -0.2 15,398 - BACOVA_00146 0.51 -1.1 15,398 - BACOVA_00146 0.51 +0.9 15,398 - BACOVA_00146 0.51 +0.3 15,399 + BACOVA_00146 0.51 -0.6 15,399 + BACOVA_00146 0.51 +0.2 15,400 - BACOVA_00146 0.51 -0.5 15,488 - BACOVA_00146 0.65 -1.5 15,516 + BACOVA_00146 0.69 +0.3 15,519 - BACOVA_00146 0.70 +0.9 15,519 - BACOVA_00146 0.70 -0.9 15,571 - BACOVA_00146 0.78 +0.2 15,646 + BACOVA_00146 0.90 -0.1 15,676 + -1.0 15,677 - -0.1 15,697 + -0.2 15,698 - +0.7 15,701 - +0.9 15,715 + +0.7 15,715 + -0.8 15,715 + +0.1 15,715 + +0.6 15,716 - +0.4 15,719 + -0.1 15,740 + -0.2 15,759 + -0.4 15,760 - +0.7 15,760 - +0.5 15,801 + BACOVA_00147 0.14 -0.8 15,801 + BACOVA_00147 0.14 +0.2 15,864 + BACOVA_00147 0.27 +0.7 15,877 + BACOVA_00147 0.29 -0.1 15,878 - BACOVA_00147 0.30 +0.0 15,940 + BACOVA_00147 0.42 +0.4 15,958 + BACOVA_00147 0.46 +0.5 15,959 - BACOVA_00147 0.46 +1.0
Or see this region's nucleotide sequence