Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28755

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_28750 and insE are separated by 188 nucleotidesinsE and NIAGMN_28760 overlap by 74 nucleotidesNIAGMN_28760 and toxB are separated by 91 nucleotides NIAGMN_28750: NIAGMN_28750 - TraI domain-containing protein, at 51,439 to 52,695 _28750 NIAGMN_28755: insE - Transposase InsE and inactivated derivatives, at 52,884 to 53,387 insE NIAGMN_28760: NIAGMN_28760 - Transposase Tra5, at 53,314 to 53,586 _28760 NIAGMN_28765: toxB - toxin B, at 53,678 to 63,187 toxB Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.918 kb on + strand, within NIAGMN_28750at 51.919 kb on - strand, within NIAGMN_28750at 51.919 kb on - strand, within NIAGMN_28750at 51.948 kb on + strand, within NIAGMN_28750at 51.948 kb on + strand, within NIAGMN_28750at 51.949 kb on - strand, within NIAGMN_28750at 51.949 kb on - strand, within NIAGMN_28750at 51.949 kb on - strand, within NIAGMN_28750at 51.949 kb on - strand, within NIAGMN_28750at 51.949 kb on - strand, within NIAGMN_28750at 51.951 kb on + strand, within NIAGMN_28750at 51.952 kb on - strand, within NIAGMN_28750at 52.133 kb on + strand, within NIAGMN_28750at 52.133 kb on + strand, within NIAGMN_28750at 52.133 kb on + strand, within NIAGMN_28750at 52.133 kb on + strand, within NIAGMN_28750at 52.133 kb on + strand, within NIAGMN_28750at 52.133 kb on + strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.134 kb on - strand, within NIAGMN_28750at 52.145 kb on + strand, within NIAGMN_28750at 52.145 kb on + strand, within NIAGMN_28750at 52.146 kb on - strand, within NIAGMN_28750at 52.146 kb on - strand, within NIAGMN_28750at 52.146 kb on - strand, within NIAGMN_28750at 52.149 kb on + strand, within NIAGMN_28750at 52.149 kb on + strand, within NIAGMN_28750at 52.149 kb on + strand, within NIAGMN_28750at 52.150 kb on - strand, within NIAGMN_28750at 52.164 kb on + strand, within NIAGMN_28750at 52.164 kb on + strand, within NIAGMN_28750at 52.164 kb on + strand, within NIAGMN_28750at 52.373 kb on + strand, within NIAGMN_28750at 52.374 kb on - strand, within NIAGMN_28750at 52.374 kb on - strand, within NIAGMN_28750at 52.374 kb on - strand, within NIAGMN_28750at 52.396 kb on - strand, within NIAGMN_28750at 52.396 kb on - strand, within NIAGMN_28750at 52.412 kb on + strand, within NIAGMN_28750at 52.412 kb on + strand, within NIAGMN_28750at 52.412 kb on + strand, within NIAGMN_28750at 52.413 kb on - strand, within NIAGMN_28750at 52.413 kb on - strand, within NIAGMN_28750at 52.456 kb on - strand, within NIAGMN_28750at 52.518 kb on - strand, within NIAGMN_28750at 52.518 kb on - strand, within NIAGMN_28750at 52.518 kb on - strand, within NIAGMN_28750at 52.530 kb on + strand, within NIAGMN_28750at 52.530 kb on + strand, within NIAGMN_28750at 52.530 kb on + strand, within NIAGMN_28750at 52.530 kb on + strand, within NIAGMN_28750at 52.531 kb on - strand, within NIAGMN_28750at 52.531 kb on - strand, within NIAGMN_28750at 52.643 kb on + strandat 52.643 kb on + strandat 52.643 kb on + strandat 52.643 kb on + strandat 52.643 kb on + strandat 52.644 kb on - strandat 52.644 kb on - strandat 52.644 kb on - strandat 52.767 kb on + strandat 52.789 kb on + strandat 52.813 kb on - strandat 53.152 kb on + strand, within insEat 53.185 kb on + strand, within insEat 53.186 kb on - strand, within insEat 53.186 kb on - strand, within insEat 53.186 kb on - strand, within insEat 53.186 kb on - strand, within insEat 53.186 kb on - strand, within insEat 53.269 kb on + strand, within insEat 53.270 kb on - strand, within insEat 53.308 kb on - strand, within insEat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.382 kb on - strandat 53.603 kb on + strandat 53.604 kb on - strandat 53.604 kb on - strandat 53.604 kb on - strandat 53.604 kb on - strandat 53.604 kb on - strandat 53.604 kb on - strandat 53.640 kb on - strandat 53.645 kb on + strandat 53.646 kb on - strandat 53.679 kb on + strandat 53.705 kb on - strandat 53.705 kb on - strandat 53.721 kb on - strandat 53.721 kb on - strandat 53.721 kb on - strandat 53.723 kb on - strandat 53.723 kb on - strandat 53.748 kb on - strandat 53.748 kb on - strandat 54.056 kb on - strandat 54.059 kb on + strandat 54.059 kb on + strandat 54.062 kb on - strandat 54.062 kb on - strandat 54.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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51,918 + NIAGMN_28750 0.38 +0.8
51,919 - NIAGMN_28750 0.38 -1.3
51,919 - NIAGMN_28750 0.38 -1.1
51,948 + NIAGMN_28750 0.40 +1.5
51,948 + NIAGMN_28750 0.40 -1.6
51,949 - NIAGMN_28750 0.41 +0.0
51,949 - NIAGMN_28750 0.41 -0.2
51,949 - NIAGMN_28750 0.41 +0.1
51,949 - NIAGMN_28750 0.41 +0.9
51,949 - NIAGMN_28750 0.41 +0.7
51,951 + NIAGMN_28750 0.41 +0.1
51,952 - NIAGMN_28750 0.41 +1.0
52,133 + NIAGMN_28750 0.55 -0.7
52,133 + NIAGMN_28750 0.55 +0.4
52,133 + NIAGMN_28750 0.55 +0.3
52,133 + NIAGMN_28750 0.55 +0.5
52,133 + NIAGMN_28750 0.55 +0.2
52,133 + NIAGMN_28750 0.55 -1.6
52,134 - NIAGMN_28750 0.55 +0.3
52,134 - NIAGMN_28750 0.55 +1.9
52,134 - NIAGMN_28750 0.55 +0.3
52,134 - NIAGMN_28750 0.55 -1.4
52,134 - NIAGMN_28750 0.55 -0.7
52,134 - NIAGMN_28750 0.55 -0.4
52,134 - NIAGMN_28750 0.55 +0.4
52,134 - NIAGMN_28750 0.55 +0.3
52,145 + NIAGMN_28750 0.56 -0.5
52,145 + NIAGMN_28750 0.56 -1.2
52,146 - NIAGMN_28750 0.56 -1.0
52,146 - NIAGMN_28750 0.56 -0.4
52,146 - NIAGMN_28750 0.56 -0.0
52,149 + NIAGMN_28750 0.56 -0.1
52,149 + NIAGMN_28750 0.56 +0.3
52,149 + NIAGMN_28750 0.56 +0.6
52,150 - NIAGMN_28750 0.57 -0.3
52,164 + NIAGMN_28750 0.58 -1.0
52,164 + NIAGMN_28750 0.58 -0.8
52,164 + NIAGMN_28750 0.58 +1.8
52,373 + NIAGMN_28750 0.74 -1.4
52,374 - NIAGMN_28750 0.74 -0.6
52,374 - NIAGMN_28750 0.74 -2.5
52,374 - NIAGMN_28750 0.74 -1.6
52,396 - NIAGMN_28750 0.76 +0.3
52,396 - NIAGMN_28750 0.76 -2.7
52,412 + NIAGMN_28750 0.77 -0.2
52,412 + NIAGMN_28750 0.77 +1.2
52,412 + NIAGMN_28750 0.77 +1.5
52,413 - NIAGMN_28750 0.77 -2.1
52,413 - NIAGMN_28750 0.77 +0.6
52,456 - NIAGMN_28750 0.81 +0.3
52,518 - NIAGMN_28750 0.86 +1.4
52,518 - NIAGMN_28750 0.86 +0.8
52,518 - NIAGMN_28750 0.86 -1.1
52,530 + NIAGMN_28750 0.87 +1.0
52,530 + NIAGMN_28750 0.87 -0.1
52,530 + NIAGMN_28750 0.87 +0.5
52,530 + NIAGMN_28750 0.87 +1.2
52,531 - NIAGMN_28750 0.87 -0.0
52,531 - NIAGMN_28750 0.87 +1.2
52,643 + -0.3
52,643 + -0.7
52,643 + -0.6
52,643 + -0.6
52,643 + -0.2
52,644 - -0.3
52,644 - -0.9
52,644 - -0.3
52,767 + -0.4
52,789 + -0.2
52,813 - +0.2
53,152 + insE NIAGMN_28755 0.53 -0.8
53,185 + insE NIAGMN_28755 0.60 -0.5
53,186 - insE NIAGMN_28755 0.60 +1.4
53,186 - insE NIAGMN_28755 0.60 -1.3
53,186 - insE NIAGMN_28755 0.60 -0.1
53,186 - insE NIAGMN_28755 0.60 -1.4
53,186 - insE NIAGMN_28755 0.60 +0.9
53,269 + insE NIAGMN_28755 0.76 +0.6
53,270 - insE NIAGMN_28755 0.77 +2.1
53,308 - insE NIAGMN_28755 0.84 +0.7
53,382 - -0.3
53,382 - +0.0
53,382 - -0.6
53,382 - -0.5
53,382 - -0.3
53,382 - +1.0
53,382 - +0.6
53,382 - -1.4
53,382 - -0.9
53,382 - +1.1
53,603 + -1.4
53,604 - -0.9
53,604 - +0.1
53,604 - -0.2
53,604 - +1.2
53,604 - +0.9
53,604 - -0.3
53,640 - -0.3
53,645 + -2.0
53,646 - -0.4
53,679 + -0.5
53,705 - +0.2
53,705 - -1.0
53,721 - +1.0
53,721 - -0.3
53,721 - -1.7
53,723 - -0.3
53,723 - +0.6
53,748 - +0.7
53,748 - -0.1
54,056 - -0.6
54,059 + +1.0
54,059 + -0.1
54,062 - -1.1
54,062 - +0.1
54,287 - +0.9

Or see this region's nucleotide sequence