Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28120

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_28115 and NIAGMN_28120 are separated by 60 nucleotidesNIAGMN_28120 and NIAGMN_28125 overlap by 4 nucleotidesNIAGMN_28125 and NIAGMN_28130 are separated by 5 nucleotides NIAGMN_28115: NIAGMN_28115 - phage portal protein, at 5,445,006 to 5,448,404 _28115 NIAGMN_28120: NIAGMN_28120 - tail assembly protein, at 5,448,465 to 5,449,037 _28120 NIAGMN_28125: NIAGMN_28125 - phage tail protein, at 5,449,034 to 5,449,777 _28125 NIAGMN_28130: NIAGMN_28130 - phage minor tail protein L, at 5,449,783 to 5,450,481 _28130 Position (kb) 5448 5449 5450Strain fitness (log2 ratio) -1 0 1at 5447.681 kb on + strand, within NIAGMN_28115at 5447.934 kb on - strand, within NIAGMN_28115at 5447.983 kb on - strand, within NIAGMN_28115at 5447.983 kb on - strand, within NIAGMN_28115at 5448.225 kb on - strandat 5448.903 kb on + strand, within NIAGMN_28120

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,447,681 + NIAGMN_28115 0.79 -0.9
5,447,934 - NIAGMN_28115 0.86 -0.5
5,447,983 - NIAGMN_28115 0.88 +1.4
5,447,983 - NIAGMN_28115 0.88 -1.1
5,448,225 - +1.6
5,448,903 + NIAGMN_28120 0.76 +0.4

Or see this region's nucleotide sequence