Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27830

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntychF and ycgV are separated by 843 nucleotidesycgV and dhaK are separated by 334 nucleotides NIAGMN_27825: ychF - redox-regulated ATPase YchF, at 5,390,096 to 5,391,187 ychF NIAGMN_27830: ycgV - Putative uncharacterized protein YcgV, at 5,392,031 to 5,393,674 ycgV NIAGMN_27835: dhaK - dihydroxyacetone kinase subunit DhaK, at 5,394,009 to 5,395,079 dhaK Position (kb) 5392 5393 5394Strain fitness (log2 ratio) -1 0 1at 5391.446 kb on + strandat 5392.019 kb on + strandat 5392.201 kb on + strand, within ycgVat 5392.460 kb on - strand, within ycgVat 5392.516 kb on + strand, within ycgVat 5392.573 kb on + strand, within ycgVat 5392.628 kb on - strand, within ycgVat 5392.919 kb on - strand, within ycgVat 5392.940 kb on - strand, within ycgVat 5393.216 kb on + strand, within ycgVat 5393.385 kb on + strand, within ycgVat 5393.620 kb on + strandat 5394.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,391,446 + +0.4
5,392,019 + +1.2
5,392,201 + ycgV NIAGMN_27830 0.10 +0.1
5,392,460 - ycgV NIAGMN_27830 0.26 -1.0
5,392,516 + ycgV NIAGMN_27830 0.30 -1.4
5,392,573 + ycgV NIAGMN_27830 0.33 +1.6
5,392,628 - ycgV NIAGMN_27830 0.36 -1.5
5,392,919 - ycgV NIAGMN_27830 0.54 -0.4
5,392,940 - ycgV NIAGMN_27830 0.55 +1.6
5,393,216 + ycgV NIAGMN_27830 0.72 -0.4
5,393,385 + ycgV NIAGMN_27830 0.82 -1.0
5,393,620 + +0.6
5,394,108 + +1.6

Or see this region's nucleotide sequence