Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27715

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarX and narX overlap by 8 nucleotidesnarX and ychO are separated by 0 nucleotides NIAGMN_27710: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,370,826 to 5,372,622 narX NIAGMN_27715: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,372,615 to 5,373,265 narX NIAGMN_27720: ychO - inverse autotransporter invasin YchO, at 5,373,266 to 5,374,696 ychO Position (kb) 5372 5373 5374Strain fitness (log2 ratio) -1 0 1at 5372.117 kb on + strand, within narXat 5372.345 kb on + strand, within narXat 5372.695 kb on + strand, within narXat 5372.708 kb on - strand, within narXat 5372.798 kb on - strand, within narXat 5373.100 kb on + strand, within narXat 5373.479 kb on + strand, within ychOat 5373.742 kb on + strand, within ychOat 5373.906 kb on + strand, within ychOat 5374.136 kb on - strand, within ychO

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,372,117 + narX NIAGMN_27710 0.72 -1.6
5,372,345 + narX NIAGMN_27710 0.85 -1.0
5,372,695 + narX NIAGMN_27715 0.12 +1.0
5,372,708 - narX NIAGMN_27715 0.14 -0.1
5,372,798 - narX NIAGMN_27715 0.28 +0.4
5,373,100 + narX NIAGMN_27715 0.75 -0.1
5,373,479 + ychO NIAGMN_27720 0.15 -0.1
5,373,742 + ychO NIAGMN_27720 0.33 +0.7
5,373,906 + ychO NIAGMN_27720 0.45 +1.6
5,374,136 - ychO NIAGMN_27720 0.61 -0.1

Or see this region's nucleotide sequence