Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Tyr_trna and Tyr_trna are separated by 209 nucleotides Tyr_trna and narI are separated by 539 nucleotides narI and narJ overlap by 1 nucleotides narJ and narH overlap by 4 nucleotides
NIAGMN_27670: Tyr_trna - tRNA-Tyr(gta), at 5,361,123 to 5,361,207
_trna
NIAGMN_27675: Tyr_trna - tRNA-Tyr(gta), at 5,361,417 to 5,361,501
_trna
NIAGMN_27680: narI - respiratory nitrate reductase subunit gamma, at 5,362,041 to 5,362,718
narI
NIAGMN_27685: narJ - nitrate reductase molybdenum cofactor assembly chaperone, at 5,362,718 to 5,363,428
narJ
NIAGMN_27690: narH - nitrate reductase subunit beta, at 5,363,425 to 5,364,963
narH
Position (kb) 5362
5363 Strain fitness (log2 ratio) -1
0
1 at 5361.363 kb on + strand at 5361.585 kb on - strand at 5361.930 kb on - strand at 5361.930 kb on - strand at 5362.070 kb on + strand at 5362.071 kb on - strand at 5362.269 kb on - strand, within narI at 5362.688 kb on + strand at 5363.583 kb on + strand, within narH at 5363.627 kb on + strand, within narH at 5363.627 kb on + strand, within narH at 5363.634 kb on - strand, within narH
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 5,361,363 + -0.8 5,361,585 - +0.4 5,361,930 - -0.9 5,361,930 - -0.7 5,362,070 + +0.7 5,362,071 - +1.6 5,362,269 - narI NIAGMN_27680 0.34 +0.5 5,362,688 + +0.1 5,363,583 + narH NIAGMN_27690 0.10 +0.6 5,363,627 + narH NIAGMN_27690 0.13 +0.3 5,363,627 + narH NIAGMN_27690 0.13 +0.6 5,363,634 - narH NIAGMN_27690 0.14 -0.1
Or see this region's nucleotide sequence