Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_27095 and NIAGMN_27100 are separated by 29 nucleotides NIAGMN_27100 and NIAGMN_27105 are separated by 6 nucleotides NIAGMN_27105 and NIAGMN_27110 are separated by 22 nucleotides NIAGMN_27110 and NIAGMN_27115 overlap by 17 nucleotides NIAGMN_27115 and NIAGMN_27120 are separated by 102 nucleotides
NIAGMN_27095: NIAGMN_27095 - DUF1627 domain-containing protein, at 5,266,624 to 5,267,394
_27095
NIAGMN_27100: NIAGMN_27100 - DNA replication protein DnaC, at 5,267,424 to 5,268,164
_27100
NIAGMN_27105: NIAGMN_27105 - DNA-binding protein, at 5,268,171 to 5,269,124
_27105
NIAGMN_27110: NIAGMN_27110 - Rha family transcriptional regulator, at 5,269,147 to 5,269,572
_27110
NIAGMN_27115: NIAGMN_27115 - Rha family transcriptional regulator, at 5,269,556 to 5,269,831
_27115
NIAGMN_27120: NIAGMN_27120 - transcriptional regulator, at 5,269,934 to 5,270,323
_27120
Position (kb) 5268
5269
5270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5267.531 kb on + strand, within NIAGMN_27100 at 5267.531 kb on + strand, within NIAGMN_27100 at 5267.578 kb on - strand, within NIAGMN_27100 at 5267.769 kb on + strand, within NIAGMN_27100 at 5267.862 kb on - strand, within NIAGMN_27100 at 5267.939 kb on - strand, within NIAGMN_27100 at 5267.939 kb on - strand, within NIAGMN_27100 at 5267.952 kb on - strand, within NIAGMN_27100 at 5268.087 kb on - strand, within NIAGMN_27100 at 5268.153 kb on - strand at 5268.366 kb on - strand, within NIAGMN_27105 at 5268.470 kb on - strand, within NIAGMN_27105 at 5268.544 kb on - strand, within NIAGMN_27105 at 5268.555 kb on - strand, within NIAGMN_27105 at 5268.858 kb on - strand, within NIAGMN_27105 at 5269.600 kb on + strand, within NIAGMN_27115 at 5269.729 kb on - strand, within NIAGMN_27115
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 5,267,531 + NIAGMN_27100 0.14 -0.0 5,267,531 + NIAGMN_27100 0.14 +0.9 5,267,578 - NIAGMN_27100 0.21 +0.4 5,267,769 + NIAGMN_27100 0.47 -2.5 5,267,862 - NIAGMN_27100 0.59 +1.6 5,267,939 - NIAGMN_27100 0.70 -0.0 5,267,939 - NIAGMN_27100 0.70 -1.6 5,267,952 - NIAGMN_27100 0.71 +1.2 5,268,087 - NIAGMN_27100 0.89 -0.4 5,268,153 - -0.4 5,268,366 - NIAGMN_27105 0.20 +0.1 5,268,470 - NIAGMN_27105 0.31 -1.0 5,268,544 - NIAGMN_27105 0.39 +1.4 5,268,555 - NIAGMN_27105 0.40 +2.6 5,268,858 - NIAGMN_27105 0.72 +0.5 5,269,600 + NIAGMN_27115 0.16 +0.7 5,269,729 - NIAGMN_27115 0.63 +0.4
Or see this region's nucleotide sequence