Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25960

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnifJ and NIAGMN_25955 are separated by 365 nucleotidesNIAGMN_25955 and NIAGMN_25960 overlap by 26 nucleotidesNIAGMN_25960 and uspF are separated by 140 nucleotides NIAGMN_25945: nifJ - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 5,067,615 to 5,071,139 nifJ NIAGMN_25955: NIAGMN_25955 - Putative outer membrane protein, at 5,071,505 to 5,071,876 _25955 NIAGMN_25960: NIAGMN_25960 - hypothetical protein, at 5,071,851 to 5,072,618 _25960 NIAGMN_25965: uspF - universal stress protein UspF, at 5,072,759 to 5,073,193 uspF Position (kb) 5071 5072 5073Strain fitness (log2 ratio) -1 0 1at 5071.896 kb on - strandat 5072.232 kb on - strand, within NIAGMN_25960at 5072.256 kb on + strand, within NIAGMN_25960at 5072.596 kb on + strandat 5072.657 kb on - strandat 5072.897 kb on + strand, within uspFat 5073.346 kb on - strandat 5073.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,071,896 - -0.4
5,072,232 - NIAGMN_25960 0.50 -0.5
5,072,256 + NIAGMN_25960 0.53 +0.0
5,072,596 + +0.2
5,072,657 - -0.4
5,072,897 + uspF NIAGMN_25965 0.32 +0.1
5,073,346 - -0.6
5,073,588 + +0.6

Or see this region's nucleotide sequence