Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25530

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntompC2 and NIAGMN_25530 are separated by 168 nucleotidesNIAGMN_25530 and NIAGMN_25535 are separated by 122 nucleotidesNIAGMN_25535 and espR1 are separated by 62 nucleotides NIAGMN_25525: ompC2 - Outer membrane porin C 2, at 4,978,450 to 4,979,550 ompC2 NIAGMN_25530: NIAGMN_25530 - IpaH-like protein, at 4,979,719 to 4,980,222 _25530 NIAGMN_25535: NIAGMN_25535 - leucine Rich Repeat family protein, at 4,980,345 to 4,980,977 _25535 NIAGMN_25540: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 4,981,040 to 4,982,299 espR1 Position (kb) 4979 4980 4981Strain fitness (log2 ratio) -1 0 1 2 3at 4978.798 kb on + strand, within ompC2at 4978.893 kb on + strand, within ompC2at 4978.904 kb on + strand, within ompC2at 4979.178 kb on + strand, within ompC2at 4979.503 kb on - strandat 4979.594 kb on - strandat 4979.620 kb on - strandat 4980.893 kb on + strand, within NIAGMN_25535

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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4,978,798 + ompC2 NIAGMN_25525 0.32 +3.2
4,978,893 + ompC2 NIAGMN_25525 0.40 +0.5
4,978,904 + ompC2 NIAGMN_25525 0.41 +0.4
4,979,178 + ompC2 NIAGMN_25525 0.66 -0.0
4,979,503 - +2.2
4,979,594 - +0.6
4,979,620 - -0.2
4,980,893 + NIAGMN_25535 0.87 -0.4

Or see this region's nucleotide sequence