Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24015

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
4,697,723	+	csgA	NIAGMN_24000	0.86	+0.7
4,697,784	+				+0.1
4,697,787	+				-1.1
4,697,787	+				-0.1
4,697,798	+				+0.3
4,697,856	-				-1.0
4,697,917	+	csgC	NIAGMN_24005	0.22	-0.3
4,697,918	-	csgC	NIAGMN_24005	0.22	+1.7
4,697,918	-	csgC	NIAGMN_24005	0.22	+2.1
4,697,918	-	csgC	NIAGMN_24005	0.22	+0.1
4,698,291	-				-0.5
4,698,604	-				-0.3
4,698,608	-				+1.6
4,698,692	+				+0.8
4,698,715	+				+0.1
4,699,040	+	ymdB	NIAGMN_24015	0.63	-0.7
4,699,040	+	ymdB	NIAGMN_24015	0.63	-0.3
4,699,041	-	ymdB	NIAGMN_24015	0.63	+0.4
4,699,041	-	ymdB	NIAGMN_24015	0.63	+2.2
4,699,043	-	ymdB	NIAGMN_24015	0.63	+1.7
4,699,166	+	ymdB	NIAGMN_24015	0.87	-2.4
4,699,178	+	ymdB	NIAGMN_24015	0.89	-2.2
4,699,387	-	clsC	NIAGMN_24020	0.14	-0.7
4,699,511	-	clsC	NIAGMN_24020	0.22	+0.7
4,699,511	-	clsC	NIAGMN_24020	0.22	+0.2
4,699,932	-	clsC	NIAGMN_24020	0.51	-0.3