Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22650

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntldtA and Asn_trna are separated by 55 nucleotidesAsn_trna and nac are separated by 325 nucleotides NIAGMN_22645: ldtA - L,D-transpeptidase, at 4,467,576 to 4,468,511 ldtA NIAGMN_22650: Asn_trna - tRNA-Asn(gtt), at 4,468,567 to 4,468,642 _trna NIAGMN_22655: nac - nitrogen assimilation transcriptional regulator NAC, at 4,468,968 to 4,469,885 nac Position (kb) 4468 4469Strain fitness (log2 ratio) -1 0 1 2at 4467.630 kb on - strandat 4467.764 kb on + strand, within ldtAat 4467.923 kb on + strand, within ldtAat 4467.942 kb on - strand, within ldtAat 4468.138 kb on + strand, within ldtAat 4468.139 kb on - strand, within ldtAat 4468.545 kb on - strandat 4468.922 kb on + strandat 4469.299 kb on + strand, within nac

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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4,467,630 - -0.2
4,467,764 + ldtA NIAGMN_22645 0.20 +0.4
4,467,923 + ldtA NIAGMN_22645 0.37 -0.6
4,467,942 - ldtA NIAGMN_22645 0.39 -0.7
4,468,138 + ldtA NIAGMN_22645 0.60 +2.2
4,468,139 - ldtA NIAGMN_22645 0.60 +2.6
4,468,545 - -0.2
4,468,922 + -0.4
4,469,299 + nac NIAGMN_22655 0.36 -0.3

Or see this region's nucleotide sequence