Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22585 and NIAGMN_22590 overlap by 4 nucleotides NIAGMN_22590 and tnp-IS3 overlap by 35 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and NIAGMN_22605 are separated by 255 nucleotides NIAGMN_22605 and fepA overlap by 13 nucleotides
NIAGMN_22585: NIAGMN_22585 - chemotaxis protein, at 4,455,517 to 4,456,422
_22585
NIAGMN_22590: NIAGMN_22590 - Vimentin yjdA, at 4,456,419 to 4,457,318
_22590
NIAGMN_22595: tnp-IS3 - IS3 family transposase, at 4,457,284 to 4,458,171
tnp-IS3
NIAGMN_22600: tnp-IS3 - IS3 family transposase, at 4,458,171 to 4,458,497
tnp-IS3
NIAGMN_22605: NIAGMN_22605 - hypothetical protein, at 4,458,753 to 4,458,881
_22605
NIAGMN_22610: fepA - TonB-dependent receptor, at 4,458,869 to 4,461,016
fepA
Position (kb) 4457
4458
4459 Strain fitness (log2 ratio) -1
0
1
2 at 4458.586 kb on - strand at 4458.678 kb on - strand at 4458.696 kb on + strand at 4458.696 kb on + strand at 4458.800 kb on + strand, within NIAGMN_22605 at 4458.892 kb on + strand at 4458.935 kb on - strand at 4459.007 kb on - strand at 4459.110 kb on - strand, within fepA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 4,458,586 - -0.4 4,458,678 - -1.6 4,458,696 + -0.6 4,458,696 + +2.6 4,458,800 + NIAGMN_22605 0.36 -0.7 4,458,892 + +0.1 4,458,935 - +0.1 4,459,007 - +0.3 4,459,110 - fepA NIAGMN_22610 0.11 +2.0
Or see this region's nucleotide sequence