Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gatY and gatZ are separated by 28 nucleotides gatZ and gatA are separated by 9 nucleotides gatA and gatB are separated by 30 nucleotides gatB and gatB are separated by 3 nucleotides
NIAGMN_22060: gatY - tagatose-bisphosphate aldolase subunit GatY, at 4,349,627 to 4,350,481
gatY
NIAGMN_22065: gatZ - tagatose-bisphosphate aldolase subunit GatZ, at 4,350,510 to 4,351,772
gatZ
NIAGMN_22070: gatA - PTS galactitol transporter subunit IIA, at 4,351,782 to 4,352,234
gatA
NIAGMN_22075: gatB - PTS galactitol transporter subunit IIB, at 4,352,265 to 4,352,549
gatB
NIAGMN_22080: gatB - PTS galactitol transporter subunit IIB, at 4,352,553 to 4,353,908
gatB
Position (kb) 4350
4351
4352 Strain fitness (log2 ratio) -1
0
1
2 at 4349.731 kb on - strand, within gatY at 4349.789 kb on - strand, within gatY at 4349.789 kb on - strand, within gatY at 4350.169 kb on + strand, within gatY at 4350.169 kb on + strand, within gatY at 4350.169 kb on + strand, within gatY at 4350.170 kb on - strand, within gatY at 4350.170 kb on - strand, within gatY at 4350.173 kb on + strand, within gatY at 4350.173 kb on + strand, within gatY at 4350.174 kb on - strand, within gatY at 4350.174 kb on - strand, within gatY at 4350.480 kb on - strand at 4350.496 kb on - strand at 4350.557 kb on - strand at 4350.847 kb on - strand, within gatZ at 4351.006 kb on - strand, within gatZ at 4351.148 kb on - strand, within gatZ at 4351.781 kb on + strand at 4351.900 kb on + strand, within gatA at 4352.211 kb on + strand at 4352.245 kb on - strand at 4352.403 kb on + strand, within gatB at 4352.405 kb on + strand, within gatB at 4352.425 kb on + strand, within gatB at 4352.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 4,349,731 - gatY NIAGMN_22060 0.12 -1.1 4,349,789 - gatY NIAGMN_22060 0.19 -0.6 4,349,789 - gatY NIAGMN_22060 0.19 +1.1 4,350,169 + gatY NIAGMN_22060 0.63 +0.7 4,350,169 + gatY NIAGMN_22060 0.63 +0.3 4,350,169 + gatY NIAGMN_22060 0.63 +0.4 4,350,170 - gatY NIAGMN_22060 0.64 +0.7 4,350,170 - gatY NIAGMN_22060 0.64 +0.9 4,350,173 + gatY NIAGMN_22060 0.64 +0.1 4,350,173 + gatY NIAGMN_22060 0.64 +0.3 4,350,174 - gatY NIAGMN_22060 0.64 +1.1 4,350,174 - gatY NIAGMN_22060 0.64 +0.9 4,350,480 - +0.1 4,350,496 - -0.3 4,350,557 - +0.7 4,350,847 - gatZ NIAGMN_22065 0.27 +0.5 4,351,006 - gatZ NIAGMN_22065 0.39 -0.7 4,351,148 - gatZ NIAGMN_22065 0.51 -0.8 4,351,781 + -0.1 4,351,900 + gatA NIAGMN_22070 0.26 +0.1 4,352,211 + +0.7 4,352,245 - +0.5 4,352,403 + gatB NIAGMN_22075 0.48 +2.7 4,352,405 + gatB NIAGMN_22075 0.49 +0.3 4,352,425 + gatB NIAGMN_22075 0.56 +1.9 4,352,621 + +1.7
Or see this region's nucleotide sequence