Strain Fitness in Escherichia coli ECRC102 around NIAGMN_19570

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
3,859,469	+	ppx	NIAGMN_19565	0.39	+1.8
3,859,507	+	ppx	NIAGMN_19565	0.41	+0.2
3,859,591	-	ppx	NIAGMN_19565	0.47	+0.5
3,859,591	-	ppx	NIAGMN_19565	0.47	-1.4
3,859,813	-	ppx	NIAGMN_19565	0.61	+1.2
3,859,986	-	ppx	NIAGMN_19565	0.72	+0.5
3,860,022	-	ppx	NIAGMN_19565	0.75	-0.5
3,860,022	-	ppx	NIAGMN_19565	0.75	-1.8
3,860,150	+	ppx	NIAGMN_19565	0.83	+1.8
3,860,249	+	ppx	NIAGMN_19565	0.89	-0.6
3,860,249	+	ppx	NIAGMN_19565	0.89	+1.3
3,860,250	-	ppx	NIAGMN_19565	0.89	+0.4
3,860,252	+	ppx	NIAGMN_19565	0.89	-0.4
3,860,252	+	ppx	NIAGMN_19565	0.89	+1.8
3,860,252	+	ppx	NIAGMN_19565	0.89	+0.5
3,860,322	+				+0.1
3,860,323	-				+1.4
3,860,323	-				-0.5
3,860,400	-				+0.1
3,860,454	-				-0.1
3,860,474	-				+1.5
3,860,528	+				+0.2
3,860,529	-				+1.8
3,860,634	+	ppk1	NIAGMN_19570	0.10	+0.2
3,860,667	-	ppk1	NIAGMN_19570	0.12	-0.5
3,860,699	+	ppk1	NIAGMN_19570	0.14	+1.0
3,860,838	-	ppk1	NIAGMN_19570	0.20	+0.0
3,860,871	+	ppk1	NIAGMN_19570	0.22	+0.8
3,860,872	-	ppk1	NIAGMN_19570	0.22	+0.2
3,860,876	-	ppk1	NIAGMN_19570	0.22	+0.8
3,860,943	-	ppk1	NIAGMN_19570	0.25	+1.8
3,860,978	-	ppk1	NIAGMN_19570	0.27	+1.8
3,860,978	-	ppk1	NIAGMN_19570	0.27	-0.2
3,860,982	-	ppk1	NIAGMN_19570	0.27	-1.6
3,861,026	-	ppk1	NIAGMN_19570	0.29	+0.8
3,861,084	-	ppk1	NIAGMN_19570	0.32	+0.5
3,861,210	+	ppk1	NIAGMN_19570	0.38	-1.6
3,861,455	+	ppk1	NIAGMN_19570	0.50	+0.2
3,861,456	-	ppk1	NIAGMN_19570	0.50	-2.5
3,861,583	-	ppk1	NIAGMN_19570	0.56	-1.0
3,861,781	+	ppk1	NIAGMN_19570	0.66	+0.5
3,861,781	+	ppk1	NIAGMN_19570	0.66	+0.2
3,861,819	-	ppk1	NIAGMN_19570	0.68	+0.2
3,861,932	-	ppk1	NIAGMN_19570	0.73	-0.8
3,862,003	-	ppk1	NIAGMN_19570	0.77	-0.2
3,862,026	-	ppk1	NIAGMN_19570	0.78	+0.4
3,862,070	-	ppk1	NIAGMN_19570	0.80	-1.2
3,862,097	+	ppk1	NIAGMN_19570	0.81	-1.2
3,862,105	-	ppk1	NIAGMN_19570	0.82	+0.1
3,862,192	+	ppk1	NIAGMN_19570	0.86	-1.0
3,862,193	-	ppk1	NIAGMN_19570	0.86	+1.1
3,862,259	-	ppk1	NIAGMN_19570	0.89	-0.6
3,862,300	-				+0.8
3,862,300	-				-1.9
3,862,300	-				+0.2
3,862,466	+				+0.1
3,862,467	-				-0.8
3,862,467	-				+1.2
3,862,469	-				+1.8
3,862,530	+				-0.8
3,862,543	-				-1.2
3,862,560	+				+1.8
3,862,560	+				+0.5
3,862,560	+				+1.3
3,862,560	+				+0.6
3,862,561	-				+0.0
3,862,561	-				+0.9
3,862,644	-				+0.8
3,862,657	+				+0.8
3,862,658	-				+0.0
3,862,658	-				+1.5
3,862,658	-				-0.5
3,862,658	-				+0.0
3,862,658	-				-1.7
3,862,752	-	purN	NIAGMN_19575	0.15	+0.8
3,862,752	-	purN	NIAGMN_19575	0.15	-0.4
3,862,815	-	purN	NIAGMN_19575	0.25	+1.0
3,862,815	-	purN	NIAGMN_19575	0.25	+1.8
3,862,827	+	purN	NIAGMN_19575	0.27	+0.0
3,862,895	+	purN	NIAGMN_19575	0.37	+0.1
3,862,896	-	purN	NIAGMN_19575	0.38	-1.0
3,862,896	-	purN	NIAGMN_19575	0.38	+1.4
3,862,941	+	purN	NIAGMN_19575	0.45	-1.0
3,862,941	+	purN	NIAGMN_19575	0.45	-0.8
3,862,941	+	purN	NIAGMN_19575	0.45	+0.4
3,862,941	+	purN	NIAGMN_19575	0.45	+0.5
3,862,941	+	purN	NIAGMN_19575	0.45	-0.1
3,862,942	-	purN	NIAGMN_19575	0.45	-2.1
3,862,942	-	purN	NIAGMN_19575	0.45	-0.8
3,862,942	-	purN	NIAGMN_19575	0.45	-0.4
3,862,942	-	purN	NIAGMN_19575	0.45	-1.9
3,862,997	-	purN	NIAGMN_19575	0.53	+0.0
3,863,062	+	purN	NIAGMN_19575	0.64	+0.6
3,863,062	+	purN	NIAGMN_19575	0.64	-0.4
3,863,062	+	purN	NIAGMN_19575	0.64	-1.5
3,863,062	+	purN	NIAGMN_19575	0.64	-1.0
3,863,063	-	purN	NIAGMN_19575	0.64	-0.3
3,863,063	-	purN	NIAGMN_19575	0.64	-1.0
3,863,063	-	purN	NIAGMN_19575	0.64	-1.9
3,863,063	-	purN	NIAGMN_19575	0.64	+1.6
3,863,063	-	purN	NIAGMN_19575	0.64	+0.1
3,863,063	-	purN	NIAGMN_19575	0.64	-1.0
3,863,063	-	purN	NIAGMN_19575	0.64	+2.1
3,863,063	-	purN	NIAGMN_19575	0.64	-1.5
3,863,063	-	purN	NIAGMN_19575	0.64	-0.6
3,863,206	-	purN	NIAGMN_19575	0.86	-1.0
3,863,231	+				-1.2
3,863,243	+				+0.2
3,863,243	+				+2.6
3,863,277	-				-1.0
3,863,277	-				-0.5
3,863,288	+				+1.8
3,863,288	+				+0.8
3,863,288	+				-0.8
3,863,295	+				+0.8
3,863,417	-	purM	NIAGMN_19580	0.12	-0.4
3,863,449	-	purM	NIAGMN_19580	0.15	+1.4
3,863,471	-	purM	NIAGMN_19580	0.17	-0.3