Strain Fitness in Escherichia coli ECRC102 around NIAGMN_19335

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
3,808,145	+	hcaD	NIAGMN_19330	0.19	+1.8
3,808,146	-	hcaD	NIAGMN_19330	0.19	-0.2
3,808,153	+	hcaD	NIAGMN_19330	0.19	-0.5
3,808,153	+	hcaD	NIAGMN_19330	0.19	+0.2
3,808,154	-	hcaD	NIAGMN_19330	0.19	+0.8
3,808,154	-	hcaD	NIAGMN_19330	0.19	+0.1
3,808,154	-	hcaD	NIAGMN_19330	0.19	+3.8
3,808,267	-	hcaD	NIAGMN_19330	0.29	-0.2
3,808,365	-	hcaD	NIAGMN_19330	0.37	+0.5
3,808,410	-	hcaD	NIAGMN_19330	0.41	+0.8
3,808,420	+	hcaD	NIAGMN_19330	0.41	+1.2
3,808,420	+	hcaD	NIAGMN_19330	0.41	-0.5
3,808,470	+	hcaD	NIAGMN_19330	0.46	+0.2
3,808,471	-	hcaD	NIAGMN_19330	0.46	+3.4
3,808,471	-	hcaD	NIAGMN_19330	0.46	+1.0
3,808,506	-	hcaD	NIAGMN_19330	0.49	-1.0
3,808,546	-	hcaD	NIAGMN_19330	0.52	+0.1
3,808,553	-	hcaD	NIAGMN_19330	0.53	-0.5
3,808,619	+	hcaD	NIAGMN_19330	0.58	-0.5
3,808,619	+	hcaD	NIAGMN_19330	0.58	-2.0
3,808,619	+	hcaD	NIAGMN_19330	0.58	+0.7
3,808,619	+	hcaD	NIAGMN_19330	0.58	+0.6
3,808,620	-	hcaD	NIAGMN_19330	0.58	-0.5
3,808,620	-	hcaD	NIAGMN_19330	0.58	+1.8
3,808,620	-	hcaD	NIAGMN_19330	0.58	-2.2
3,808,620	-	hcaD	NIAGMN_19330	0.58	-0.0
3,808,620	-	hcaD	NIAGMN_19330	0.58	-0.5
3,808,620	-	hcaD	NIAGMN_19330	0.58	+0.4
3,808,662	-	hcaD	NIAGMN_19330	0.62	-0.5
3,808,662	-	hcaD	NIAGMN_19330	0.62	+1.5
3,808,662	-	hcaD	NIAGMN_19330	0.62	+0.3
3,808,662	-	hcaD	NIAGMN_19330	0.62	-2.0
3,808,745	+	hcaD	NIAGMN_19330	0.68	+1.1
3,808,807	-	hcaD	NIAGMN_19330	0.74	-1.2
3,808,809	-	hcaD	NIAGMN_19330	0.74	+1.1
3,808,809	-	hcaD	NIAGMN_19330	0.74	-0.2
3,808,809	-	hcaD	NIAGMN_19330	0.74	-0.8
3,808,851	+	hcaD	NIAGMN_19330	0.77	+1.0
3,808,851	+	hcaD	NIAGMN_19330	0.77	-1.6
3,808,852	-	hcaD	NIAGMN_19330	0.77	-0.1
3,809,103	-				+1.0
3,809,135	-				-0.0
3,809,154	+				+0.2
3,809,249	-	hcaB	NIAGMN_19335	0.14	-1.6
3,809,249	-	hcaB	NIAGMN_19335	0.14	-0.2
3,809,332	-	hcaB	NIAGMN_19335	0.24	-1.3
3,809,595	+	hcaB	NIAGMN_19335	0.57	-0.8
3,809,596	-	hcaB	NIAGMN_19335	0.57	-0.5
3,809,596	-	hcaB	NIAGMN_19335	0.57	-0.2
3,809,607	-	hcaB	NIAGMN_19335	0.58	+1.4
3,809,648	+	hcaB	NIAGMN_19335	0.63	+0.6
3,809,648	+	hcaB	NIAGMN_19335	0.63	+0.4
3,809,786	+	hcaB	NIAGMN_19335	0.80	+0.8
3,809,867	+				-1.1
3,809,893	-				+0.8
3,809,961	-				+0.9
3,809,993	+	hcaC	NIAGMN_19340	0.16	-1.4
3,809,994	-	hcaC	NIAGMN_19340	0.16	-0.7
3,810,127	+	hcaC	NIAGMN_19340	0.58	-1.9
3,810,128	-	hcaC	NIAGMN_19340	0.58	-0.2
3,810,128	-	hcaC	NIAGMN_19340	0.58	-0.2
3,810,128	-	hcaC	NIAGMN_19340	0.58	+1.0
3,810,157	-	hcaC	NIAGMN_19340	0.67	-0.4
3,810,200	-	hcaC	NIAGMN_19340	0.80	+1.8
3,810,249	+				+0.2
3,810,250	-				-1.8
3,810,250	-				+1.2
3,810,250	-				-0.2
3,810,250	-				-0.5
3,810,271	+				+0.5
3,810,272	-				+0.6
3,810,316	-	hcaF	NIAGMN_19345	0.10	-0.8
3,810,383	+	hcaF	NIAGMN_19345	0.23	-0.0
3,810,383	+	hcaF	NIAGMN_19345	0.23	-0.2
3,810,384	-	hcaF	NIAGMN_19345	0.24	+0.0
3,810,384	-	hcaF	NIAGMN_19345	0.24	+0.2
3,810,425	+	hcaF	NIAGMN_19345	0.31	-2.3
3,810,425	+	hcaF	NIAGMN_19345	0.31	+0.8
3,810,426	-	hcaF	NIAGMN_19345	0.32	-0.8
3,810,445	+	hcaF	NIAGMN_19345	0.35	-1.3
3,810,445	+	hcaF	NIAGMN_19345	0.35	+0.6
3,810,445	+	hcaF	NIAGMN_19345	0.35	-0.2
3,810,446	-	hcaF	NIAGMN_19345	0.35	+0.4
3,810,446	-	hcaF	NIAGMN_19345	0.35	-0.4
3,810,446	-	hcaF	NIAGMN_19345	0.35	-0.8
3,810,470	-	hcaF	NIAGMN_19345	0.40	-0.4
3,810,470	-	hcaF	NIAGMN_19345	0.40	+1.0
3,810,579	+	hcaF	NIAGMN_19345	0.61	+1.8
3,810,712	+	hcaF	NIAGMN_19345	0.87	-1.0
3,810,712	+	hcaF	NIAGMN_19345	0.87	+1.3
3,810,755	-				+2.1
3,810,755	-				+1.1
3,810,755	-				+1.2
3,810,755	-				-0.2
3,810,865	+				+1.8
3,810,866	-				+0.5
3,810,866	-				+0.9
3,810,866	-				-1.2
3,810,866	-				+0.2
3,810,897	-				+1.5
3,810,897	-				-0.6
3,810,898	+				+1.0
3,810,899	-				+1.2
3,810,899	-				+0.4
3,810,899	-				+1.0
3,810,899	-				-0.7
3,810,902	+				+2.1
3,810,902	+				-0.8
3,810,902	+				+0.2
3,810,902	+				+1.0
3,810,903	-				-1.5
3,810,903	-				+0.2
3,810,906	-				+0.8