Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_18755 and NIAGMN_18760 are separated by 75 nucleotides NIAGMN_18760 and tra8 are separated by 35 nucleotides
NIAGMN_18755: NIAGMN_18755 - Procyclic acidic repetitive protein (PARP), at 3,708,710 to 3,709,960
_18755
NIAGMN_18760: NIAGMN_18760 - SmpA-OmlA domain-containing protein, at 3,710,036 to 3,710,338
_18760
NIAGMN_18765: tra8 - IS30 family transposase, at 3,710,374 to 3,711,129
tra8
Position (kb)
3710
3711 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3709.442 kb on + strand, within NIAGMN_18755 at 3709.442 kb on + strand, within NIAGMN_18755 at 3709.462 kb on + strand, within NIAGMN_18755 at 3709.693 kb on + strand, within NIAGMN_18755 at 3709.717 kb on + strand, within NIAGMN_18755 at 3709.938 kb on + strand at 3709.963 kb on + strand at 3709.963 kb on + strand at 3709.963 kb on + strand at 3709.985 kb on - strand at 3709.988 kb on + strand at 3710.034 kb on - strand at 3710.082 kb on + strand, within NIAGMN_18760 at 3710.083 kb on - strand, within NIAGMN_18760 at 3710.083 kb on - strand, within NIAGMN_18760 at 3710.083 kb on - strand, within NIAGMN_18760 at 3710.125 kb on + strand, within NIAGMN_18760 at 3710.126 kb on - strand, within NIAGMN_18760 at 3710.198 kb on - strand, within NIAGMN_18760 at 3710.198 kb on - strand, within NIAGMN_18760 at 3710.199 kb on + strand, within NIAGMN_18760 at 3710.199 kb on + strand, within NIAGMN_18760 at 3710.199 kb on + strand, within NIAGMN_18760 at 3710.199 kb on + strand, within NIAGMN_18760 at 3710.200 kb on - strand, within NIAGMN_18760 at 3710.200 kb on - strand, within NIAGMN_18760 at 3710.203 kb on + strand, within NIAGMN_18760 at 3710.203 kb on + strand, within NIAGMN_18760 at 3710.204 kb on - strand, within NIAGMN_18760 at 3710.204 kb on - strand, within NIAGMN_18760 at 3710.204 kb on - strand, within NIAGMN_18760 at 3710.208 kb on + strand, within NIAGMN_18760 at 3710.208 kb on + strand, within NIAGMN_18760 at 3710.208 kb on + strand, within NIAGMN_18760 at 3710.209 kb on - strand, within NIAGMN_18760 at 3710.268 kb on - strand, within NIAGMN_18760 at 3710.352 kb on - strand at 3710.352 kb on - strand at 3710.390 kb on - strand at 3710.390 kb on - strand at 3710.390 kb on - strand at 3710.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 3,709,442 + NIAGMN_18755 0.59 -0.2 3,709,442 + NIAGMN_18755 0.59 +0.2 3,709,462 + NIAGMN_18755 0.60 +0.5 3,709,693 + NIAGMN_18755 0.79 +0.8 3,709,717 + NIAGMN_18755 0.80 -1.5 3,709,938 + -0.9 3,709,963 + -1.6 3,709,963 + -0.2 3,709,963 + -2.0 3,709,985 - -0.8 3,709,988 + +0.8 3,710,034 - -0.6 3,710,082 + NIAGMN_18760 0.15 -1.6 3,710,083 - NIAGMN_18760 0.16 +1.8 3,710,083 - NIAGMN_18760 0.16 -0.4 3,710,083 - NIAGMN_18760 0.16 +0.9 3,710,125 + NIAGMN_18760 0.29 +0.2 3,710,126 - NIAGMN_18760 0.30 -3.5 3,710,198 - NIAGMN_18760 0.53 +0.2 3,710,198 - NIAGMN_18760 0.53 +0.8 3,710,199 + NIAGMN_18760 0.54 +0.4 3,710,199 + NIAGMN_18760 0.54 +1.8 3,710,199 + NIAGMN_18760 0.54 +0.5 3,710,199 + NIAGMN_18760 0.54 +0.4 3,710,200 - NIAGMN_18760 0.54 +0.8 3,710,200 - NIAGMN_18760 0.54 +2.3 3,710,203 + NIAGMN_18760 0.55 -0.2 3,710,203 + NIAGMN_18760 0.55 +0.2 3,710,204 - NIAGMN_18760 0.55 +0.5 3,710,204 - NIAGMN_18760 0.55 +1.2 3,710,204 - NIAGMN_18760 0.55 -0.2 3,710,208 + NIAGMN_18760 0.57 +0.7 3,710,208 + NIAGMN_18760 0.57 +1.2 3,710,208 + NIAGMN_18760 0.57 -0.1 3,710,209 - NIAGMN_18760 0.57 -1.0 3,710,268 - NIAGMN_18760 0.77 +0.7 3,710,352 - -0.3 3,710,352 - +0.1 3,710,390 - -0.0 3,710,390 - +0.4 3,710,390 - +0.2 3,710,390 - -0.5
Or see this region's nucleotide sequence