Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18165

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
3,593,627	+	cysH	NIAGMN_18150	0.53	+2.8
3,593,677	+	cysH	NIAGMN_18150	0.60	+1.5
3,593,768	-	cysH	NIAGMN_18150	0.72	+0.2
3,593,805	+	cysH	NIAGMN_18150	0.77	+1.2
3,593,807	+	cysH	NIAGMN_18150	0.78	-1.0
3,593,807	+	cysH	NIAGMN_18150	0.78	+0.4
3,593,813	+	cysH	NIAGMN_18150	0.78	+0.3
3,593,861	+	cysH	NIAGMN_18150	0.85	+1.2
3,593,973	+				-0.7
3,593,988	+				+0.8
3,594,074	-				+1.0
3,594,082	+				+1.8
3,594,082	+				-1.0
3,594,082	+				-0.8
3,594,083	-				-0.9
3,594,165	+				+0.6
3,594,166	-				-0.3
3,594,193	-				+0.7
3,594,193	-				+1.1
3,594,208	-				-0.6
3,594,239	+				-0.3
3,594,240	-				+2.8
3,594,248	-				+0.4
3,594,266	+	hokG	NIAGMN_18160	0.20	+0.8
3,594,266	+	hokG	NIAGMN_18160	0.20	-0.2
3,594,266	+	hokG	NIAGMN_18160	0.20	-0.9
3,594,266	+	hokG	NIAGMN_18160	0.20	+0.5
3,594,266	+	hokG	NIAGMN_18160	0.20	-1.5
3,594,267	-	hokG	NIAGMN_18160	0.21	-0.1
3,594,269	+	hokG	NIAGMN_18160	0.22	-0.9
3,594,269	+	hokG	NIAGMN_18160	0.22	+1.5
3,594,269	+	hokG	NIAGMN_18160	0.22	+0.1
3,594,270	-	hokG	NIAGMN_18160	0.23	-0.6
3,594,279	+	hokG	NIAGMN_18160	0.29	+1.1
3,594,279	+	hokG	NIAGMN_18160	0.29	-0.3
3,594,279	+	hokG	NIAGMN_18160	0.29	+0.3
3,594,279	+	hokG	NIAGMN_18160	0.29	-1.8
3,594,280	-	hokG	NIAGMN_18160	0.29	-1.1
3,594,280	-	hokG	NIAGMN_18160	0.29	-1.0
3,594,317	+	hokG	NIAGMN_18160	0.54	+0.2
3,594,317	+	hokG	NIAGMN_18160	0.54	+1.8
3,594,317	+	hokG	NIAGMN_18160	0.54	-1.0
3,594,318	-	hokG	NIAGMN_18160	0.54	+1.5
3,594,318	-	hokG	NIAGMN_18160	0.54	+0.2
3,594,346	-	hokG	NIAGMN_18160	0.73	+0.4
3,594,385	+				-0.5
3,594,385	+				+0.9
3,594,385	+				-1.3
3,594,385	+				-1.0
3,594,475	+				-0.3
3,594,478	-				-1.6
3,594,497	-				-0.4
3,594,556	-				+0.0
3,594,584	+				+1.2
3,594,730	+				+0.4
3,595,033	+	cas3	NIAGMN_18165	0.17	-1.1
3,595,033	+	cas3	NIAGMN_18165	0.17	+0.1
3,595,235	+	cas3	NIAGMN_18165	0.24	+1.4
3,595,236	-	cas3	NIAGMN_18165	0.24	-1.0
3,595,316	+	cas3	NIAGMN_18165	0.27	+1.6
3,595,317	-	cas3	NIAGMN_18165	0.27	+0.8
3,595,424	+	cas3	NIAGMN_18165	0.31	+1.2
3,595,492	+	cas3	NIAGMN_18165	0.34	+1.2
3,595,492	+	cas3	NIAGMN_18165	0.34	+1.5
3,595,523	+	cas3	NIAGMN_18165	0.35	-1.0
3,595,626	+	cas3	NIAGMN_18165	0.39	+0.2
3,595,626	+	cas3	NIAGMN_18165	0.39	+0.2
3,595,626	+	cas3	NIAGMN_18165	0.39	+0.0
3,595,627	-	cas3	NIAGMN_18165	0.39	-0.6
3,595,627	-	cas3	NIAGMN_18165	0.39	-0.1
3,595,712	-	cas3	NIAGMN_18165	0.42	+0.7
3,595,750	+	cas3	NIAGMN_18165	0.43	+3.2
3,595,895	+	cas3	NIAGMN_18165	0.49	+1.8
3,595,895	+	cas3	NIAGMN_18165	0.49	-0.9
3,595,898	+	cas3	NIAGMN_18165	0.49	+1.8
3,595,898	+	cas3	NIAGMN_18165	0.49	-0.9
3,595,965	+	cas3	NIAGMN_18165	0.51	-0.6
3,595,965	+	cas3	NIAGMN_18165	0.51	-1.3
3,595,965	+	cas3	NIAGMN_18165	0.51	+0.2
3,595,965	+	cas3	NIAGMN_18165	0.51	+0.5
3,595,965	+	cas3	NIAGMN_18165	0.51	-0.9
3,595,965	+	cas3	NIAGMN_18165	0.51	-0.8
3,595,965	+	cas3	NIAGMN_18165	0.51	+0.4
3,595,966	-	cas3	NIAGMN_18165	0.51	-0.8
3,595,966	-	cas3	NIAGMN_18165	0.51	+1.2
3,596,039	+	cas3	NIAGMN_18165	0.54	-0.2
3,596,321	+	cas3	NIAGMN_18165	0.65	-2.7
3,596,444	+	cas3	NIAGMN_18165	0.69	-0.5
3,596,486	+	cas3	NIAGMN_18165	0.71	-0.3
3,596,604	-	cas3	NIAGMN_18165	0.75	-0.6
3,596,614	+	cas3	NIAGMN_18165	0.75	+0.0
3,596,718	-	cas3	NIAGMN_18165	0.79	+0.8
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.4
3,596,727	+	cas3	NIAGMN_18165	0.80	-2.0
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.1
3,596,727	+	cas3	NIAGMN_18165	0.80	+0.2
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.1
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.0
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.6
3,596,727	+	cas3	NIAGMN_18165	0.80	-1.8
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.8
3,596,727	+	cas3	NIAGMN_18165	0.80	+0.6
3,596,727	+	cas3	NIAGMN_18165	0.80	+0.0
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.1
3,596,727	+	cas3	NIAGMN_18165	0.80	+0.2
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.8
3,596,727	+	cas3	NIAGMN_18165	0.80	+2.1
3,596,728	-	cas3	NIAGMN_18165	0.80	+0.0
3,596,728	-	cas3	NIAGMN_18165	0.80	-0.8
3,596,728	-	cas3	NIAGMN_18165	0.80	-0.8
3,596,728	-	cas3	NIAGMN_18165	0.80	-0.3
3,596,728	-	cas3	NIAGMN_18165	0.80	+0.2
3,596,728	-	cas3	NIAGMN_18165	0.80	+0.5
3,596,728	-	cas3	NIAGMN_18165	0.80	+0.0
3,596,770	+	cas3	NIAGMN_18165	0.81	-1.0
3,596,771	-	cas3	NIAGMN_18165	0.81	+0.2
3,596,896	-	cas3	NIAGMN_18165	0.86	-0.4
3,596,896	-	cas3	NIAGMN_18165	0.86	-0.3
3,596,949	+	cas3	NIAGMN_18165	0.88	+0.3
3,596,970	+	cas3	NIAGMN_18165	0.89	-0.8
3,597,029	+				-2.0
3,597,057	+				-0.5
3,597,057	+				-1.1
3,597,281	+				-0.8
3,597,304	+				-0.4
3,597,311	+				-0.6
3,597,311	+				-1.9
3,597,371	+				+0.3
3,597,375	+				+0.0
3,597,375	+				-0.5
3,597,375	+				+1.7
3,597,375	+				+0.6
3,597,539	+	casA	NIAGMN_18170	0.10	+0.7
3,597,539	+	casA	NIAGMN_18170	0.10	-1.9
3,597,542	+	casA	NIAGMN_18170	0.11	-2.8
3,597,543	-	casA	NIAGMN_18170	0.11	-1.6
3,597,585	+	casA	NIAGMN_18170	0.13	+0.7
3,597,585	+	casA	NIAGMN_18170	0.13	+1.8
3,597,585	+	casA	NIAGMN_18170	0.13	+1.2
3,597,586	-	casA	NIAGMN_18170	0.13	-0.3
3,597,586	-	casA	NIAGMN_18170	0.13	+0.2
3,597,638	+	casA	NIAGMN_18170	0.17	-0.8
3,597,678	+	casA	NIAGMN_18170	0.19	-1.4
3,597,678	+	casA	NIAGMN_18170	0.19	-0.8
3,597,678	+	casA	NIAGMN_18170	0.19	+1.8
3,597,765	+	casA	NIAGMN_18170	0.25	+0.8
3,597,781	-	casA	NIAGMN_18170	0.26	+1.8
3,597,783	+	casA	NIAGMN_18170	0.26	+0.1
3,597,783	+	casA	NIAGMN_18170	0.26	+1.0
3,597,784	-	casA	NIAGMN_18170	0.26	+1.2
3,597,806	+	casA	NIAGMN_18170	0.28	-0.5
3,597,806	+	casA	NIAGMN_18170	0.28	-0.2
3,597,806	+	casA	NIAGMN_18170	0.28	-1.0
3,597,806	+	casA	NIAGMN_18170	0.28	-0.5
3,597,806	+	casA	NIAGMN_18170	0.28	+1.1
3,597,806	+	casA	NIAGMN_18170	0.28	-0.9
3,597,806	+	casA	NIAGMN_18170	0.28	-0.5
3,597,806	+	casA	NIAGMN_18170	0.28	-2.6
3,597,806	+	casA	NIAGMN_18170	0.28	-0.5
3,597,806	+	casA	NIAGMN_18170	0.28	+0.2
3,597,806	+	casA	NIAGMN_18170	0.28	-2.3
3,597,807	-	casA	NIAGMN_18170	0.28	-0.5
3,597,807	-	casA	NIAGMN_18170	0.28	+0.2
3,597,807	-	casA	NIAGMN_18170	0.28	+0.4
3,597,807	-	casA	NIAGMN_18170	0.28	-0.9
3,597,807	-	casA	NIAGMN_18170	0.28	-0.2
3,597,807	-	casA	NIAGMN_18170	0.28	+0.3
3,597,848	+	casA	NIAGMN_18170	0.30	+0.7
3,597,887	+	casA	NIAGMN_18170	0.33	-1.8
3,598,060	-	casA	NIAGMN_18170	0.44	-0.2
3,598,143	+	casA	NIAGMN_18170	0.49	-1.3
3,598,152	+	casA	NIAGMN_18170	0.50	+0.8
3,598,153	-	casA	NIAGMN_18170	0.50	-0.2
3,598,179	+	casA	NIAGMN_18170	0.51	+0.6
3,598,231	+	casA	NIAGMN_18170	0.55	-0.3
3,598,243	+	casA	NIAGMN_18170	0.55	+0.3
3,598,243	+	casA	NIAGMN_18170	0.55	-0.0
3,598,243	+	casA	NIAGMN_18170	0.55	-0.5