Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16200

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
3,204,509	+	dlsT	NIAGMN_16195	0.32	+0.3
3,204,510	-	dlsT	NIAGMN_16195	0.32	+0.5
3,204,517	+	dlsT	NIAGMN_16195	0.32	-1.4
3,204,517	+	dlsT	NIAGMN_16195	0.32	-1.3
3,204,517	+	dlsT	NIAGMN_16195	0.32	-0.7
3,204,517	+	dlsT	NIAGMN_16195	0.32	+0.6
3,204,517	+	dlsT	NIAGMN_16195	0.32	-0.1
3,204,518	-	dlsT	NIAGMN_16195	0.32	+0.2
3,204,518	-	dlsT	NIAGMN_16195	0.32	+3.3
3,204,518	-	dlsT	NIAGMN_16195	0.32	-1.1
3,204,560	+	dlsT	NIAGMN_16195	0.35	-0.1
3,204,561	-	dlsT	NIAGMN_16195	0.35	-0.2
3,204,561	-	dlsT	NIAGMN_16195	0.35	+1.0
3,204,704	+	dlsT	NIAGMN_16195	0.46	+1.6
3,204,704	+	dlsT	NIAGMN_16195	0.46	+0.9
3,204,705	-	dlsT	NIAGMN_16195	0.46	+4.0
3,204,705	-	dlsT	NIAGMN_16195	0.46	+1.0
3,204,705	-	dlsT	NIAGMN_16195	0.46	+0.7
3,204,705	-	dlsT	NIAGMN_16195	0.46	-0.4
3,204,754	+	dlsT	NIAGMN_16195	0.50	-0.4
3,204,757	+	dlsT	NIAGMN_16195	0.50	-1.0
3,204,757	+	dlsT	NIAGMN_16195	0.50	+1.0
3,204,758	-	dlsT	NIAGMN_16195	0.50	-1.3
3,204,801	+	dlsT	NIAGMN_16195	0.53	-0.5
3,204,801	+	dlsT	NIAGMN_16195	0.53	+0.1
3,204,822	-	dlsT	NIAGMN_16195	0.55	+2.0
3,204,859	+	dlsT	NIAGMN_16195	0.58	+0.8
3,204,961	-	dlsT	NIAGMN_16195	0.65	+1.0
3,204,979	+	dlsT	NIAGMN_16195	0.67	+0.3
3,204,979	+	dlsT	NIAGMN_16195	0.67	-0.7
3,205,009	+	dlsT	NIAGMN_16195	0.69	+1.4
3,205,061	-	dlsT	NIAGMN_16195	0.73	-0.6
3,205,061	-	dlsT	NIAGMN_16195	0.73	+1.0
3,205,094	+	dlsT	NIAGMN_16195	0.75	+0.5
3,205,098	+	dlsT	NIAGMN_16195	0.76	+0.2
3,205,099	-	dlsT	NIAGMN_16195	0.76	+2.2
3,205,128	+	dlsT	NIAGMN_16195	0.78	+2.0
3,205,128	+	dlsT	NIAGMN_16195	0.78	+0.4
3,205,128	+	dlsT	NIAGMN_16195	0.78	+1.0
3,205,128	+	dlsT	NIAGMN_16195	0.78	+0.4
3,205,129	-	dlsT	NIAGMN_16195	0.78	-0.8
3,205,265	-	dlsT	NIAGMN_16195	0.88	+1.7
3,205,265	-	dlsT	NIAGMN_16195	0.88	-0.6
3,205,265	-	dlsT	NIAGMN_16195	0.88	-0.2
3,205,290	+				+1.6
3,205,291	-				+0.9
3,205,343	+				+0.1
3,205,343	+				-0.2
3,205,344	-				+3.3
3,205,344	-				-0.4
3,205,464	+				-0.2
3,205,464	+				+0.3
3,205,485	-				-1.3
3,205,509	+				+0.7
3,205,528	+				-0.2
3,205,529	-				+1.0
3,205,599	+	yhaM	NIAGMN_16200	0.12	-1.2
3,205,600	-	yhaM	NIAGMN_16200	0.12	-1.8
3,205,600	-	yhaM	NIAGMN_16200	0.12	-0.8
3,205,600	-	yhaM	NIAGMN_16200	0.12	+2.0
3,205,701	+	yhaM	NIAGMN_16200	0.19	+0.6
3,205,702	-	yhaM	NIAGMN_16200	0.19	-1.4
3,205,802	-	yhaM	NIAGMN_16200	0.27	-1.3
3,205,894	+	yhaM	NIAGMN_16200	0.34	+0.7
3,205,894	+	yhaM	NIAGMN_16200	0.34	-2.0
3,205,909	+	yhaM	NIAGMN_16200	0.35	-1.2
3,205,910	-	yhaM	NIAGMN_16200	0.35	-0.5
3,206,076	+	yhaM	NIAGMN_16200	0.48	-0.6
3,206,076	+	yhaM	NIAGMN_16200	0.48	-0.2
3,206,077	-	yhaM	NIAGMN_16200	0.48	-0.4
3,206,110	+	yhaM	NIAGMN_16200	0.50	+0.5
3,206,110	+	yhaM	NIAGMN_16200	0.50	+0.3
3,206,111	-	yhaM	NIAGMN_16200	0.51	+1.3
3,206,111	-	yhaM	NIAGMN_16200	0.51	-0.3
3,206,111	-	yhaM	NIAGMN_16200	0.51	+0.6
3,206,126	-	yhaM	NIAGMN_16200	0.52	-0.1
3,206,126	-	yhaM	NIAGMN_16200	0.52	-0.3
3,206,201	-	yhaM	NIAGMN_16200	0.57	+0.8
3,206,254	+	yhaM	NIAGMN_16200	0.61	-1.4
3,206,254	+	yhaM	NIAGMN_16200	0.61	+0.0
3,206,255	-	yhaM	NIAGMN_16200	0.62	-1.1
3,206,255	-	yhaM	NIAGMN_16200	0.62	-0.7
3,206,255	-	yhaM	NIAGMN_16200	0.62	-1.0
3,206,255	-	yhaM	NIAGMN_16200	0.62	+1.0
3,206,308	-	yhaM	NIAGMN_16200	0.66	-0.2
3,206,308	-	yhaM	NIAGMN_16200	0.66	+0.6
3,206,378	+	yhaM	NIAGMN_16200	0.71	-0.1
3,206,378	+	yhaM	NIAGMN_16200	0.71	-0.8
3,206,379	-	yhaM	NIAGMN_16200	0.71	-1.0
3,206,379	-	yhaM	NIAGMN_16200	0.71	+1.7
3,206,379	-	yhaM	NIAGMN_16200	0.71	+0.5
3,206,379	-	yhaM	NIAGMN_16200	0.71	+0.1
3,206,394	+	yhaM	NIAGMN_16200	0.72	-2.4
3,206,394	+	yhaM	NIAGMN_16200	0.72	-0.4
3,206,506	+	yhaM	NIAGMN_16200	0.81	+0.2
3,206,621	-	yhaM	NIAGMN_16200	0.89	+0.6
3,206,804	+				-0.3
3,206,824	+				-1.1
3,206,825	-				-1.5
3,206,972	-	yhaL	NIAGMN_16205	0.48	+0.0
3,206,972	-	yhaL	NIAGMN_16205	0.48	-0.5
3,207,080	+				+0.3
3,207,080	+				+0.2
3,207,081	-				-0.5
3,207,081	-				-1.3
3,207,081	-				-0.3
3,207,081	-				+0.0
3,207,133	-				-0.3
3,207,133	-				+1.3
3,207,133	-				-0.3
3,207,154	-	yhaK	NIAGMN_16210	0.11	-1.3
3,207,202	-	yhaK	NIAGMN_16210	0.18	+0.5
3,207,202	-	yhaK	NIAGMN_16210	0.18	+1.3
3,207,236	+	yhaK	NIAGMN_16210	0.22	-0.3
3,207,237	-	yhaK	NIAGMN_16210	0.23	+0.9
3,207,237	-	yhaK	NIAGMN_16210	0.23	-0.7
3,207,292	-	yhaK	NIAGMN_16210	0.30	+1.1
3,207,355	+	yhaK	NIAGMN_16210	0.39	-1.8
3,207,355	+	yhaK	NIAGMN_16210	0.39	-2.4
3,207,356	-	yhaK	NIAGMN_16210	0.39	+0.0
3,207,375	+	yhaK	NIAGMN_16210	0.42	+1.2
3,207,375	+	yhaK	NIAGMN_16210	0.42	+1.0
3,207,376	-	yhaK	NIAGMN_16210	0.42	+2.0
3,207,376	-	yhaK	NIAGMN_16210	0.42	-0.8
3,207,479	+	yhaK	NIAGMN_16210	0.57	+0.5
3,207,591	+	yhaK	NIAGMN_16210	0.73	-1.3
3,207,672	-	yhaK	NIAGMN_16210	0.84	+0.7
3,207,672	-	yhaK	NIAGMN_16210	0.84	+1.2
3,207,676	+	yhaK	NIAGMN_16210	0.85	+0.6
3,207,676	+	yhaK	NIAGMN_16210	0.85	+0.0
3,207,695	+	yhaK	NIAGMN_16210	0.88	-0.3
3,207,695	+	yhaK	NIAGMN_16210	0.88	+0.5
3,207,696	-	yhaK	NIAGMN_16210	0.88	-0.5
3,207,715	-				-1.3
3,207,716	+				+0.3
3,207,717	-				+0.3
3,207,738	-				-1.2