Strain Fitness in Escherichia coli ECRC102 around NIAGMN_13400

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpmG and NIAGMN_13395 are separated by 97 nucleotidesNIAGMN_13395 and coaD are separated by 38 nucleotidescoaD and waaA are separated by 7 nucleotides NIAGMN_13390: rpmG - 50S ribosomal protein L33, at 2,646,456 to 2,646,623 rpmG NIAGMN_13395: NIAGMN_13395 - Formamidopyrimidine-DNA glycosylase, at 2,646,721 to 2,647,530 _13395 NIAGMN_13400: coaD - pantetheine-phosphate adenylyltransferase, at 2,647,569 to 2,648,048 coaD NIAGMN_13405: waaA - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 2,648,056 to 2,649,333 waaA Position (kb) 2647 2648 2649Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2646.673 kb on - strandat 2646.688 kb on + strandat 2646.689 kb on - strandat 2646.689 kb on - strandat 2646.720 kb on + strandat 2646.720 kb on + strandat 2646.720 kb on + strandat 2646.720 kb on + strandat 2646.720 kb on + strandat 2646.720 kb on + strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.721 kb on - strandat 2646.761 kb on + strandat 2646.761 kb on + strandat 2646.844 kb on + strand, within NIAGMN_13395at 2646.845 kb on - strand, within NIAGMN_13395at 2646.845 kb on - strand, within NIAGMN_13395at 2646.870 kb on + strand, within NIAGMN_13395at 2646.871 kb on - strand, within NIAGMN_13395at 2646.871 kb on - strand, within NIAGMN_13395at 2646.871 kb on - strand, within NIAGMN_13395at 2646.888 kb on + strand, within NIAGMN_13395at 2646.888 kb on + strand, within NIAGMN_13395at 2646.889 kb on - strand, within NIAGMN_13395at 2646.892 kb on + strand, within NIAGMN_13395at 2646.893 kb on - strand, within NIAGMN_13395at 2646.893 kb on - strand, within NIAGMN_13395at 2646.925 kb on - strand, within NIAGMN_13395at 2646.935 kb on + strand, within NIAGMN_13395at 2646.935 kb on + strand, within NIAGMN_13395at 2646.935 kb on + strand, within NIAGMN_13395at 2646.935 kb on + strand, within NIAGMN_13395at 2646.936 kb on - strand, within NIAGMN_13395at 2646.936 kb on - strand, within NIAGMN_13395at 2647.034 kb on - strand, within NIAGMN_13395at 2647.090 kb on - strand, within NIAGMN_13395at 2647.090 kb on - strand, within NIAGMN_13395at 2647.090 kb on - strand, within NIAGMN_13395at 2647.090 kb on - strand, within NIAGMN_13395at 2647.090 kb on - strand, within NIAGMN_13395at 2647.144 kb on + strand, within NIAGMN_13395at 2647.144 kb on + strand, within NIAGMN_13395at 2647.145 kb on - strand, within NIAGMN_13395at 2647.182 kb on + strand, within NIAGMN_13395at 2647.182 kb on + strand, within NIAGMN_13395at 2647.227 kb on + strand, within NIAGMN_13395at 2647.227 kb on + strand, within NIAGMN_13395at 2647.227 kb on + strand, within NIAGMN_13395at 2647.227 kb on + strand, within NIAGMN_13395at 2647.228 kb on - strand, within NIAGMN_13395at 2647.228 kb on - strand, within NIAGMN_13395at 2647.228 kb on - strand, within NIAGMN_13395at 2647.228 kb on - strand, within NIAGMN_13395at 2647.231 kb on + strand, within NIAGMN_13395at 2647.231 kb on + strand, within NIAGMN_13395at 2647.231 kb on + strand, within NIAGMN_13395at 2647.231 kb on + strand, within NIAGMN_13395at 2647.231 kb on + strand, within NIAGMN_13395at 2647.232 kb on - strand, within NIAGMN_13395at 2647.232 kb on - strand, within NIAGMN_13395at 2647.232 kb on - strand, within NIAGMN_13395at 2647.313 kb on + strand, within NIAGMN_13395at 2647.314 kb on - strand, within NIAGMN_13395at 2647.362 kb on + strand, within NIAGMN_13395at 2647.362 kb on + strand, within NIAGMN_13395at 2647.362 kb on + strand, within NIAGMN_13395at 2647.362 kb on + strand, within NIAGMN_13395at 2647.362 kb on + strand, within NIAGMN_13395at 2647.363 kb on - strand, within NIAGMN_13395at 2647.363 kb on - strand, within NIAGMN_13395at 2647.396 kb on - strand, within NIAGMN_13395at 2647.396 kb on - strand, within NIAGMN_13395at 2647.396 kb on - strand, within NIAGMN_13395at 2647.406 kb on - strand, within NIAGMN_13395at 2647.429 kb on + strand, within NIAGMN_13395at 2647.429 kb on + strand, within NIAGMN_13395at 2647.482 kb on + strandat 2647.482 kb on + strandat 2647.507 kb on + strandat 2647.508 kb on - strandat 2647.528 kb on + strandat 2647.528 kb on + strandat 2647.528 kb on + strandat 2647.528 kb on + strandat 2647.528 kb on + strandat 2647.529 kb on - strandat 2647.529 kb on - strandat 2647.551 kb on + strandat 2647.551 kb on + strandat 2647.551 kb on + strandat 2647.552 kb on - strandat 2647.552 kb on - strandat 2647.570 kb on + strandat 2647.576 kb on - strandat 2647.576 kb on - strandat 2648.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,646,673 - -0.6
2,646,688 + -1.1
2,646,689 - -0.4
2,646,689 - +0.1
2,646,720 + -0.9
2,646,720 + +0.5
2,646,720 + +0.2
2,646,720 + +2.1
2,646,720 + +0.1
2,646,720 + +0.1
2,646,721 - +0.2
2,646,721 - +0.7
2,646,721 - +0.1
2,646,721 - -0.9
2,646,721 - +0.1
2,646,721 - +0.2
2,646,721 - -1.3
2,646,721 - +0.5
2,646,721 - -1.5
2,646,721 - -0.3
2,646,721 - +1.1
2,646,761 + +0.1
2,646,761 + -0.2
2,646,844 + NIAGMN_13395 0.15 +0.3
2,646,845 - NIAGMN_13395 0.15 -0.2
2,646,845 - NIAGMN_13395 0.15 -0.1
2,646,870 + NIAGMN_13395 0.18 +2.1
2,646,871 - NIAGMN_13395 0.19 -0.1
2,646,871 - NIAGMN_13395 0.19 -0.8
2,646,871 - NIAGMN_13395 0.19 +0.7
2,646,888 + NIAGMN_13395 0.21 -1.1
2,646,888 + NIAGMN_13395 0.21 -1.0
2,646,889 - NIAGMN_13395 0.21 +0.6
2,646,892 + NIAGMN_13395 0.21 -0.4
2,646,893 - NIAGMN_13395 0.21 -0.4
2,646,893 - NIAGMN_13395 0.21 -0.1
2,646,925 - NIAGMN_13395 0.25 -0.9
2,646,935 + NIAGMN_13395 0.26 -1.0
2,646,935 + NIAGMN_13395 0.26 +0.1
2,646,935 + NIAGMN_13395 0.26 -0.3
2,646,935 + NIAGMN_13395 0.26 +0.6
2,646,936 - NIAGMN_13395 0.27 -0.6
2,646,936 - NIAGMN_13395 0.27 -0.6
2,647,034 - NIAGMN_13395 0.39 +0.6
2,647,090 - NIAGMN_13395 0.46 -1.9
2,647,090 - NIAGMN_13395 0.46 -0.3
2,647,090 - NIAGMN_13395 0.46 -0.8
2,647,090 - NIAGMN_13395 0.46 -0.0
2,647,090 - NIAGMN_13395 0.46 +0.1
2,647,144 + NIAGMN_13395 0.52 -1.7
2,647,144 + NIAGMN_13395 0.52 -0.8
2,647,145 - NIAGMN_13395 0.52 +0.5
2,647,182 + NIAGMN_13395 0.57 +0.6
2,647,182 + NIAGMN_13395 0.57 +0.3
2,647,227 + NIAGMN_13395 0.62 -0.8
2,647,227 + NIAGMN_13395 0.62 -0.5
2,647,227 + NIAGMN_13395 0.62 -0.5
2,647,227 + NIAGMN_13395 0.62 -0.9
2,647,228 - NIAGMN_13395 0.63 +1.3
2,647,228 - NIAGMN_13395 0.63 +0.5
2,647,228 - NIAGMN_13395 0.63 +2.4
2,647,228 - NIAGMN_13395 0.63 +0.3
2,647,231 + NIAGMN_13395 0.63 +0.6
2,647,231 + NIAGMN_13395 0.63 +0.6
2,647,231 + NIAGMN_13395 0.63 +0.5
2,647,231 + NIAGMN_13395 0.63 -0.1
2,647,231 + NIAGMN_13395 0.63 -2.2
2,647,232 - NIAGMN_13395 0.63 +0.4
2,647,232 - NIAGMN_13395 0.63 -0.3
2,647,232 - NIAGMN_13395 0.63 -0.1
2,647,313 + NIAGMN_13395 0.73 -0.7
2,647,314 - NIAGMN_13395 0.73 -0.8
2,647,362 + NIAGMN_13395 0.79 -1.2
2,647,362 + NIAGMN_13395 0.79 -0.6
2,647,362 + NIAGMN_13395 0.79 -1.4
2,647,362 + NIAGMN_13395 0.79 -1.2
2,647,362 + NIAGMN_13395 0.79 -0.5
2,647,363 - NIAGMN_13395 0.79 +0.5
2,647,363 - NIAGMN_13395 0.79 -0.7
2,647,396 - NIAGMN_13395 0.83 -0.1
2,647,396 - NIAGMN_13395 0.83 -0.3
2,647,396 - NIAGMN_13395 0.83 +0.7
2,647,406 - NIAGMN_13395 0.85 +0.7
2,647,429 + NIAGMN_13395 0.87 +0.5
2,647,429 + NIAGMN_13395 0.87 -0.8
2,647,482 + -0.4
2,647,482 + +2.1
2,647,507 + +0.1
2,647,508 - +0.9
2,647,528 + -0.5
2,647,528 + -0.4
2,647,528 + -0.3
2,647,528 + -0.5
2,647,528 + +3.9
2,647,529 - -0.2
2,647,529 - +0.1
2,647,551 + +1.1
2,647,551 + +0.6
2,647,551 + -0.4
2,647,552 - -0.4
2,647,552 - -0.3
2,647,570 + +0.3
2,647,576 - -0.2
2,647,576 - -0.6
2,648,079 - -1.4

Or see this region's nucleotide sequence