Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ytfI and cysQ are separated by 211 nucleotides cysQ and cpdB are separated by 189 nucleotides
NIAGMN_09880: ytfI - Uncharacterized protein YtfI, at 1,946,376 to 1,947,314
ytfI
NIAGMN_09885: cysQ - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,947,526 to 1,948,266
cysQ
NIAGMN_09895: cpdB - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 1,948,456 to 1,950,399
cpdB
Position (kb) 1947
1948
1949 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1946.674 kb on - strand, within ytfI at 1946.680 kb on - strand, within ytfI at 1946.701 kb on - strand, within ytfI at 1946.715 kb on - strand, within ytfI at 1946.717 kb on - strand, within ytfI at 1946.758 kb on - strand, within ytfI at 1946.788 kb on - strand, within ytfI at 1946.791 kb on - strand, within ytfI at 1946.791 kb on - strand, within ytfI at 1946.792 kb on + strand, within ytfI at 1946.902 kb on + strand, within ytfI at 1946.903 kb on - strand, within ytfI at 1946.903 kb on - strand, within ytfI at 1947.112 kb on + strand, within ytfI at 1947.343 kb on + strand at 1947.368 kb on + strand at 1947.503 kb on + strand at 1947.503 kb on + strand at 1947.530 kb on + strand at 1947.535 kb on - strand at 1947.578 kb on + strand at 1947.579 kb on - strand at 1947.592 kb on - strand at 1947.661 kb on - strand, within cysQ at 1947.661 kb on - strand, within cysQ at 1947.771 kb on - strand, within cysQ at 1947.896 kb on + strand, within cysQ at 1947.901 kb on + strand, within cysQ at 1947.901 kb on + strand, within cysQ at 1947.901 kb on + strand, within cysQ at 1947.901 kb on + strand, within cysQ at 1947.901 kb on + strand, within cysQ at 1947.902 kb on - strand, within cysQ at 1947.902 kb on - strand, within cysQ at 1947.902 kb on - strand, within cysQ at 1947.902 kb on - strand, within cysQ at 1947.920 kb on + strand, within cysQ at 1947.920 kb on + strand, within cysQ at 1947.920 kb on + strand, within cysQ at 1947.920 kb on + strand, within cysQ at 1947.921 kb on - strand, within cysQ at 1947.921 kb on - strand, within cysQ at 1947.921 kb on - strand, within cysQ at 1947.931 kb on + strand, within cysQ at 1947.932 kb on - strand, within cysQ at 1947.932 kb on - strand, within cysQ at 1947.932 kb on - strand, within cysQ at 1947.984 kb on + strand, within cysQ at 1947.984 kb on + strand, within cysQ at 1947.993 kb on + strand, within cysQ at 1947.993 kb on + strand, within cysQ at 1948.006 kb on - strand, within cysQ at 1948.021 kb on + strand, within cysQ at 1948.021 kb on + strand, within cysQ at 1948.022 kb on - strand, within cysQ at 1948.108 kb on - strand, within cysQ at 1948.108 kb on - strand, within cysQ at 1948.111 kb on + strand, within cysQ at 1948.111 kb on + strand, within cysQ at 1948.111 kb on + strand, within cysQ at 1948.111 kb on + strand, within cysQ at 1948.112 kb on - strand, within cysQ at 1948.209 kb on - strand at 1948.252 kb on + strand at 1948.252 kb on + strand at 1948.261 kb on + strand at 1948.261 kb on + strand at 1948.262 kb on - strand at 1948.262 kb on - strand at 1948.308 kb on + strand at 1948.312 kb on + strand at 1948.313 kb on - strand at 1948.394 kb on + strand at 1948.396 kb on + strand at 1948.396 kb on + strand at 1948.396 kb on + strand at 1948.397 kb on - strand at 1948.397 kb on - strand at 1948.400 kb on + strand at 1948.400 kb on + strand at 1948.400 kb on + strand at 1948.401 kb on - strand at 1948.401 kb on - strand at 1948.401 kb on - strand at 1948.401 kb on - strand at 1948.401 kb on - strand at 1948.401 kb on - strand at 1948.401 kb on - strand at 1948.409 kb on + strand at 1948.409 kb on + strand at 1948.410 kb on - strand at 1948.429 kb on - strand at 1948.429 kb on - strand at 1948.429 kb on - strand at 1948.440 kb on + strand at 1948.440 kb on + strand at 1948.441 kb on - strand at 1948.461 kb on + strand at 1948.461 kb on + strand at 1948.462 kb on - strand at 1948.462 kb on - strand at 1948.554 kb on + strand at 1948.554 kb on + strand at 1948.554 kb on + strand at 1948.579 kb on + strand at 1948.613 kb on + strand at 1948.613 kb on + strand at 1948.613 kb on + strand at 1948.614 kb on - strand at 1948.614 kb on - strand at 1948.664 kb on + strand, within cpdB at 1948.711 kb on + strand, within cpdB at 1948.711 kb on + strand, within cpdB at 1948.711 kb on + strand, within cpdB at 1948.712 kb on - strand, within cpdB at 1948.712 kb on - strand, within cpdB at 1948.743 kb on + strand, within cpdB at 1948.756 kb on + strand, within cpdB at 1948.756 kb on + strand, within cpdB at 1948.756 kb on + strand, within cpdB at 1948.757 kb on - strand, within cpdB at 1948.759 kb on - strand, within cpdB at 1948.759 kb on - strand, within cpdB at 1948.766 kb on + strand, within cpdB at 1948.766 kb on + strand, within cpdB at 1948.767 kb on - strand, within cpdB at 1948.770 kb on + strand, within cpdB at 1948.770 kb on + strand, within cpdB at 1948.780 kb on + strand, within cpdB at 1948.780 kb on + strand, within cpdB at 1948.781 kb on - strand, within cpdB at 1948.781 kb on - strand, within cpdB at 1948.816 kb on + strand, within cpdB at 1948.817 kb on - strand, within cpdB at 1948.868 kb on + strand, within cpdB at 1948.868 kb on + strand, within cpdB at 1948.868 kb on + strand, within cpdB at 1948.868 kb on + strand, within cpdB at 1948.868 kb on + strand, within cpdB at 1948.869 kb on - strand, within cpdB at 1948.869 kb on - strand, within cpdB at 1948.911 kb on + strand, within cpdB at 1948.919 kb on - strand, within cpdB at 1948.922 kb on + strand, within cpdB at 1948.922 kb on + strand, within cpdB at 1948.923 kb on - strand, within cpdB at 1948.923 kb on - strand, within cpdB at 1948.926 kb on + strand, within cpdB at 1948.926 kb on + strand, within cpdB at 1948.981 kb on + strand, within cpdB at 1948.981 kb on + strand, within cpdB at 1948.982 kb on - strand, within cpdB at 1948.982 kb on - strand, within cpdB at 1948.982 kb on - strand, within cpdB at 1949.055 kb on + strand, within cpdB at 1949.056 kb on - strand, within cpdB at 1949.056 kb on - strand, within cpdB at 1949.056 kb on - strand, within cpdB at 1949.152 kb on + strand, within cpdB at 1949.153 kb on - strand, within cpdB at 1949.155 kb on - strand, within cpdB at 1949.159 kb on + strand, within cpdB at 1949.159 kb on + strand, within cpdB at 1949.160 kb on - strand, within cpdB at 1949.160 kb on - strand, within cpdB at 1949.160 kb on - strand, within cpdB at 1949.179 kb on + strand, within cpdB at 1949.182 kb on + strand, within cpdB at 1949.182 kb on + strand, within cpdB at 1949.182 kb on + strand, within cpdB at 1949.183 kb on - strand, within cpdB at 1949.214 kb on + strand, within cpdB at 1949.214 kb on + strand, within cpdB at 1949.214 kb on + strand, within cpdB at 1949.215 kb on - strand, within cpdB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,946,674 - ytfI NIAGMN_09880 0.32 -1.0 1,946,680 - ytfI NIAGMN_09880 0.32 -0.7 1,946,701 - ytfI NIAGMN_09880 0.35 -0.0 1,946,715 - ytfI NIAGMN_09880 0.36 +1.2 1,946,717 - ytfI NIAGMN_09880 0.36 -0.6 1,946,758 - ytfI NIAGMN_09880 0.41 +0.4 1,946,788 - ytfI NIAGMN_09880 0.44 +0.2 1,946,791 - ytfI NIAGMN_09880 0.44 -1.0 1,946,791 - ytfI NIAGMN_09880 0.44 -0.2 1,946,792 + ytfI NIAGMN_09880 0.44 +2.0 1,946,902 + ytfI NIAGMN_09880 0.56 +1.4 1,946,903 - ytfI NIAGMN_09880 0.56 +2.3 1,946,903 - ytfI NIAGMN_09880 0.56 +1.5 1,947,112 + ytfI NIAGMN_09880 0.78 -0.5 1,947,343 + +0.2 1,947,368 + +1.1 1,947,503 + -0.2 1,947,503 + +0.6 1,947,530 + -0.8 1,947,535 - -1.7 1,947,578 + +0.4 1,947,579 - +0.4 1,947,592 - -0.3 1,947,661 - cysQ NIAGMN_09885 0.18 -1.9 1,947,661 - cysQ NIAGMN_09885 0.18 +0.3 1,947,771 - cysQ NIAGMN_09885 0.33 +1.0 1,947,896 + cysQ NIAGMN_09885 0.50 -1.1 1,947,901 + cysQ NIAGMN_09885 0.51 -0.4 1,947,901 + cysQ NIAGMN_09885 0.51 -1.5 1,947,901 + cysQ NIAGMN_09885 0.51 -0.0 1,947,901 + cysQ NIAGMN_09885 0.51 -1.5 1,947,901 + cysQ NIAGMN_09885 0.51 +3.0 1,947,902 - cysQ NIAGMN_09885 0.51 +1.1 1,947,902 - cysQ NIAGMN_09885 0.51 +0.6 1,947,902 - cysQ NIAGMN_09885 0.51 -0.7 1,947,902 - cysQ NIAGMN_09885 0.51 -0.8 1,947,920 + cysQ NIAGMN_09885 0.53 -0.3 1,947,920 + cysQ NIAGMN_09885 0.53 +1.5 1,947,920 + cysQ NIAGMN_09885 0.53 +1.0 1,947,920 + cysQ NIAGMN_09885 0.53 -0.0 1,947,921 - cysQ NIAGMN_09885 0.53 +1.4 1,947,921 - cysQ NIAGMN_09885 0.53 -0.1 1,947,921 - cysQ NIAGMN_09885 0.53 +1.4 1,947,931 + cysQ NIAGMN_09885 0.55 +1.4 1,947,932 - cysQ NIAGMN_09885 0.55 -0.1 1,947,932 - cysQ NIAGMN_09885 0.55 -1.7 1,947,932 - cysQ NIAGMN_09885 0.55 -2.2 1,947,984 + cysQ NIAGMN_09885 0.62 -0.9 1,947,984 + cysQ NIAGMN_09885 0.62 +3.5 1,947,993 + cysQ NIAGMN_09885 0.63 -0.8 1,947,993 + cysQ NIAGMN_09885 0.63 +0.6 1,948,006 - cysQ NIAGMN_09885 0.65 +0.5 1,948,021 + cysQ NIAGMN_09885 0.67 +0.6 1,948,021 + cysQ NIAGMN_09885 0.67 -0.6 1,948,022 - cysQ NIAGMN_09885 0.67 +1.3 1,948,108 - cysQ NIAGMN_09885 0.79 -1.6 1,948,108 - cysQ NIAGMN_09885 0.79 +0.4 1,948,111 + cysQ NIAGMN_09885 0.79 -0.5 1,948,111 + cysQ NIAGMN_09885 0.79 -1.0 1,948,111 + cysQ NIAGMN_09885 0.79 -0.5 1,948,111 + cysQ NIAGMN_09885 0.79 +1.2 1,948,112 - cysQ NIAGMN_09885 0.79 +2.0 1,948,209 - -0.9 1,948,252 + +0.4 1,948,252 + +2.0 1,948,261 + -1.5 1,948,261 + +3.5 1,948,262 - +0.4 1,948,262 - +1.0 1,948,308 + +1.5 1,948,312 + -0.6 1,948,313 - +0.2 1,948,394 + +1.0 1,948,396 + -0.0 1,948,396 + -1.2 1,948,396 + -0.5 1,948,397 - -1.0 1,948,397 - -0.6 1,948,400 + -1.0 1,948,400 + -0.2 1,948,400 + -0.6 1,948,401 - -0.4 1,948,401 - -0.7 1,948,401 - +0.5 1,948,401 - -1.4 1,948,401 - -1.4 1,948,401 - -1.2 1,948,401 - -0.6 1,948,409 + +0.2 1,948,409 + +0.2 1,948,410 - -1.6 1,948,429 - -0.4 1,948,429 - -0.0 1,948,429 - -0.6 1,948,440 + -1.0 1,948,440 + +1.2 1,948,441 - -0.5 1,948,461 + +2.0 1,948,461 + -0.1 1,948,462 - +0.2 1,948,462 - +2.0 1,948,554 + -0.3 1,948,554 + +0.5 1,948,554 + -0.0 1,948,579 + -1.0 1,948,613 + +0.6 1,948,613 + +0.1 1,948,613 + +0.7 1,948,614 - +0.2 1,948,614 - +0.4 1,948,664 + cpdB NIAGMN_09895 0.11 -0.2 1,948,711 + cpdB NIAGMN_09895 0.13 +0.5 1,948,711 + cpdB NIAGMN_09895 0.13 -0.4 1,948,711 + cpdB NIAGMN_09895 0.13 -0.2 1,948,712 - cpdB NIAGMN_09895 0.13 -1.0 1,948,712 - cpdB NIAGMN_09895 0.13 -0.4 1,948,743 + cpdB NIAGMN_09895 0.15 -1.0 1,948,756 + cpdB NIAGMN_09895 0.15 -1.4 1,948,756 + cpdB NIAGMN_09895 0.15 +0.8 1,948,756 + cpdB NIAGMN_09895 0.15 +1.0 1,948,757 - cpdB NIAGMN_09895 0.15 +2.0 1,948,759 - cpdB NIAGMN_09895 0.16 +1.0 1,948,759 - cpdB NIAGMN_09895 0.16 -1.2 1,948,766 + cpdB NIAGMN_09895 0.16 -1.0 1,948,766 + cpdB NIAGMN_09895 0.16 +1.4 1,948,767 - cpdB NIAGMN_09895 0.16 +0.3 1,948,770 + cpdB NIAGMN_09895 0.16 -0.7 1,948,770 + cpdB NIAGMN_09895 0.16 -1.0 1,948,780 + cpdB NIAGMN_09895 0.17 -0.2 1,948,780 + cpdB NIAGMN_09895 0.17 -0.5 1,948,781 - cpdB NIAGMN_09895 0.17 +1.0 1,948,781 - cpdB NIAGMN_09895 0.17 +0.0 1,948,816 + cpdB NIAGMN_09895 0.19 -0.3 1,948,817 - cpdB NIAGMN_09895 0.19 +2.0 1,948,868 + cpdB NIAGMN_09895 0.21 -0.2 1,948,868 + cpdB NIAGMN_09895 0.21 +1.8 1,948,868 + cpdB NIAGMN_09895 0.21 +1.4 1,948,868 + cpdB NIAGMN_09895 0.21 -0.2 1,948,868 + cpdB NIAGMN_09895 0.21 -1.7 1,948,869 - cpdB NIAGMN_09895 0.21 +2.1 1,948,869 - cpdB NIAGMN_09895 0.21 +1.2 1,948,911 + cpdB NIAGMN_09895 0.23 +1.1 1,948,919 - cpdB NIAGMN_09895 0.24 -1.4 1,948,922 + cpdB NIAGMN_09895 0.24 -0.0 1,948,922 + cpdB NIAGMN_09895 0.24 -1.2 1,948,923 - cpdB NIAGMN_09895 0.24 -2.7 1,948,923 - cpdB NIAGMN_09895 0.24 +0.2 1,948,926 + cpdB NIAGMN_09895 0.24 +0.1 1,948,926 + cpdB NIAGMN_09895 0.24 -0.0 1,948,981 + cpdB NIAGMN_09895 0.27 +0.6 1,948,981 + cpdB NIAGMN_09895 0.27 +0.6 1,948,982 - cpdB NIAGMN_09895 0.27 -0.3 1,948,982 - cpdB NIAGMN_09895 0.27 -0.1 1,948,982 - cpdB NIAGMN_09895 0.27 +0.5 1,949,055 + cpdB NIAGMN_09895 0.31 -0.6 1,949,056 - cpdB NIAGMN_09895 0.31 +0.3 1,949,056 - cpdB NIAGMN_09895 0.31 -0.4 1,949,056 - cpdB NIAGMN_09895 0.31 -0.0 1,949,152 + cpdB NIAGMN_09895 0.36 -0.1 1,949,153 - cpdB NIAGMN_09895 0.36 -1.6 1,949,155 - cpdB NIAGMN_09895 0.36 +0.2 1,949,159 + cpdB NIAGMN_09895 0.36 -0.0 1,949,159 + cpdB NIAGMN_09895 0.36 +1.4 1,949,160 - cpdB NIAGMN_09895 0.36 -0.0 1,949,160 - cpdB NIAGMN_09895 0.36 -0.0 1,949,160 - cpdB NIAGMN_09895 0.36 -1.6 1,949,179 + cpdB NIAGMN_09895 0.37 +0.8 1,949,182 + cpdB NIAGMN_09895 0.37 +0.2 1,949,182 + cpdB NIAGMN_09895 0.37 +1.0 1,949,182 + cpdB NIAGMN_09895 0.37 -0.3 1,949,183 - cpdB NIAGMN_09895 0.37 -0.3 1,949,214 + cpdB NIAGMN_09895 0.39 -0.7 1,949,214 + cpdB NIAGMN_09895 0.39 +0.4 1,949,214 + cpdB NIAGMN_09895 0.39 +1.0 1,949,215 - cpdB NIAGMN_09895 0.39 +2.0
Or see this region's nucleotide sequence