Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07570

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
1,449,509	-	pepD	NIAGMN_07560	0.73	-0.1
1,449,509	-	pepD	NIAGMN_07560	0.73	-0.6
1,449,560	+	pepD	NIAGMN_07560	0.77	-1.1
1,449,560	+	pepD	NIAGMN_07560	0.77	+0.7
1,449,561	-	pepD	NIAGMN_07560	0.77	+1.5
1,449,561	-	pepD	NIAGMN_07560	0.77	+1.5
1,449,626	+	pepD	NIAGMN_07560	0.81	+0.3
1,449,626	+	pepD	NIAGMN_07560	0.81	+1.0
1,449,684	-	pepD	NIAGMN_07560	0.85	-0.9
1,449,761	+				-0.1
1,449,785	-				+0.9
1,449,843	+				+1.5
1,449,844	-				+1.9
1,449,844	-				-0.9
1,449,844	-				+0.3
1,449,844	-				-0.9
1,449,900	+				+1.0
1,449,967	-				-0.7
1,450,054	-	prfH	NIAGMN_07565	0.20	+0.8
1,450,054	-	prfH	NIAGMN_07565	0.20	-1.3
1,450,113	+	prfH	NIAGMN_07565	0.32	-0.5
1,450,114	-	prfH	NIAGMN_07565	0.32	-0.0
1,450,114	-	prfH	NIAGMN_07565	0.32	+0.4
1,450,178	-	prfH	NIAGMN_07565	0.45	-0.6
1,450,372	+	prfH	NIAGMN_07565	0.83	-0.3
1,450,479	+	ykfJ	NIAGMN_07570	0.21	-1.1
1,450,535	+	ykfJ	NIAGMN_07570	0.42	-0.2
1,450,536	-	ykfJ	NIAGMN_07570	0.42	-1.6
1,450,640	-	ykfJ	NIAGMN_07570	0.81	-0.6
1,450,640	-	ykfJ	NIAGMN_07570	0.81	-0.1
1,450,643	+	ykfJ	NIAGMN_07570	0.82	+1.6
1,450,667	-				-0.1
1,450,669	-				+1.5
1,450,669	-				-1.3
1,450,681	-				+0.4
1,450,704	-				+2.5
1,450,720	-				+1.0
1,450,720	-				+0.5
1,450,752	-				-1.1
1,450,752	-				-0.2
1,450,752	-				+0.3
1,450,756	-				-0.5
1,450,756	-				-2.4
1,450,756	-				-0.6
1,450,756	-				-0.1
1,450,760	-				+0.9
1,450,760	-				-0.3
1,450,815	+				+0.3
1,450,817	+				-1.4
1,450,817	+				+1.3
1,450,819	+				+2.3
1,450,824	-				+0.4
1,451,213	-	yafP	NIAGMN_07575	0.57	+1.5
1,451,393	-				-0.6
1,451,399	+				-1.3
1,451,400	-				-0.9
1,451,425	-				+0.1
1,451,439	-				+3.7
1,451,595	+	yafO	NIAGMN_07580	0.34	+0.4
1,451,596	-	yafO	NIAGMN_07580	0.34	-0.9
1,451,677	+	yafO	NIAGMN_07580	0.55	+0.5
1,451,677	+	yafO	NIAGMN_07580	0.55	+0.7