Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadH and NIAGMN_07230 are separated by 811 nucleotides NIAGMN_07230 and tnpB are separated by 49 nucleotides tnpB and tnpB overlap by 4 nucleotides
NIAGMN_07225: fadH - NADH:flavin oxidoreductase, at 1,392,329 to 1,393,471
fadH
NIAGMN_07230: NIAGMN_07230 - IS66-like element ISEc8 family transposase, at 1,394,283 to 1,395,821
_07230
NIAGMN_07235: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,395,871 to 1,396,218
tnpB
NIAGMN_07240: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,396,215 to 1,396,595
tnpB
Position (kb)
1394
1395
1396 Strain fitness (log2 ratio)
-1
0
1
2 at 1393.336 kb on - strand, within fadH at 1393.469 kb on + strand at 1393.478 kb on - strand at 1393.478 kb on - strand at 1393.597 kb on - strand at 1393.597 kb on - strand at 1393.597 kb on - strand at 1393.597 kb on - strand at 1393.601 kb on + strand at 1393.602 kb on - strand at 1393.604 kb on + strand at 1393.605 kb on - strand at 1393.605 kb on - strand at 1393.605 kb on - strand at 1393.605 kb on - strand at 1393.605 kb on - strand at 1393.605 kb on - strand at 1393.608 kb on + strand at 1393.608 kb on + strand at 1393.609 kb on - strand at 1393.633 kb on - strand at 1393.676 kb on - strand at 1393.797 kb on - strand at 1393.797 kb on - strand at 1393.895 kb on - strand at 1393.896 kb on + strand at 1393.897 kb on - strand at 1393.961 kb on + strand at 1394.011 kb on + strand at 1394.159 kb on + strand at 1394.232 kb on + strand at 1394.233 kb on - strand at 1394.233 kb on - strand at 1396.679 kb on + strand at 1396.679 kb on + strand at 1396.769 kb on + strand at 1396.769 kb on + strand at 1396.770 kb on - strand at 1396.770 kb on - strand at 1396.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,393,336 - fadH NIAGMN_07225 0.88 -0.6 1,393,469 + -0.1 1,393,478 - -1.1 1,393,478 - -0.7 1,393,597 - -1.0 1,393,597 - -0.4 1,393,597 - +0.1 1,393,597 - +0.1 1,393,601 + -1.7 1,393,602 - +1.9 1,393,604 + +1.9 1,393,605 - -0.8 1,393,605 - -0.1 1,393,605 - -1.0 1,393,605 - -1.4 1,393,605 - -0.6 1,393,605 - +0.1 1,393,608 + +0.9 1,393,608 + -0.9 1,393,609 - -0.7 1,393,633 - -1.2 1,393,676 - -0.3 1,393,797 - -0.3 1,393,797 - -0.6 1,393,895 - +0.1 1,393,896 + -0.7 1,393,897 - -0.3 1,393,961 + -1.1 1,394,011 + -0.3 1,394,159 + -0.1 1,394,232 + -0.3 1,394,233 - -0.7 1,394,233 - +1.9 1,396,679 + -0.4 1,396,679 + +0.3 1,396,769 + -1.3 1,396,769 + +0.1 1,396,770 - +0.7 1,396,770 - -0.3 1,396,770 - +0.8
Or see this region's nucleotide sequence