Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mhpA and mhpR are separated by 76 nucleotides mhpR and ulaG are separated by 114 nucleotides ulaG and glxA are separated by 19 nucleotides
NIAGMN_06840: mhpA - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 1,311,856 to 1,313,520
mhpA
NIAGMN_06845: mhpR - DNA-binding transcriptional regulator, at 1,313,597 to 1,314,544
mhpR
NIAGMN_06850: ulaG - L-ascorbate lactonase UlaG, metallo-beta-lactamase superfamily, at 1,314,659 to 1,315,435
ulaG
NIAGMN_06855: glxA - AraC family transcriptional regulator, at 1,315,455 to 1,316,408
glxA
Position (kb)
1313
1314
1315 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1312.597 kb on - strand, within mhpA at 1312.598 kb on + strand, within mhpA at 1312.663 kb on - strand, within mhpA at 1312.698 kb on - strand, within mhpA at 1312.813 kb on - strand, within mhpA at 1312.883 kb on + strand, within mhpA at 1312.883 kb on + strand, within mhpA at 1312.883 kb on + strand, within mhpA at 1312.883 kb on + strand, within mhpA at 1312.883 kb on + strand, within mhpA at 1312.883 kb on + strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.884 kb on - strand, within mhpA at 1312.887 kb on + strand, within mhpA at 1312.887 kb on + strand, within mhpA at 1312.888 kb on - strand, within mhpA at 1312.888 kb on - strand, within mhpA at 1312.896 kb on + strand, within mhpA at 1312.897 kb on - strand, within mhpA at 1312.917 kb on + strand, within mhpA at 1313.227 kb on - strand, within mhpA at 1313.281 kb on - strand, within mhpA at 1313.284 kb on - strand, within mhpA at 1313.347 kb on - strand, within mhpA at 1313.347 kb on - strand, within mhpA at 1313.423 kb on + strand at 1313.423 kb on + strand at 1313.512 kb on + strand at 1313.513 kb on - strand at 1313.564 kb on + strand at 1313.565 kb on - strand at 1313.889 kb on - strand, within mhpR at 1313.889 kb on - strand, within mhpR at 1313.915 kb on - strand, within mhpR at 1313.915 kb on - strand, within mhpR at 1314.024 kb on + strand, within mhpR at 1314.236 kb on + strand, within mhpR at 1314.267 kb on - strand, within mhpR at 1314.299 kb on + strand, within mhpR at 1314.401 kb on + strand, within mhpR at 1314.401 kb on + strand, within mhpR at 1314.401 kb on + strand, within mhpR at 1314.401 kb on + strand, within mhpR at 1314.401 kb on + strand, within mhpR at 1314.401 kb on + strand, within mhpR at 1314.402 kb on - strand, within mhpR at 1314.403 kb on + strand, within mhpR at 1314.403 kb on + strand, within mhpR at 1314.404 kb on - strand, within mhpR at 1314.456 kb on + strand at 1314.457 kb on - strand at 1314.502 kb on + strand at 1314.503 kb on - strand at 1314.558 kb on + strand at 1314.621 kb on + strand at 1314.638 kb on + strand at 1314.638 kb on + strand at 1314.639 kb on - strand at 1314.695 kb on - strand at 1314.701 kb on + strand at 1314.702 kb on - strand at 1314.801 kb on + strand, within ulaG at 1314.808 kb on - strand, within ulaG at 1314.808 kb on - strand, within ulaG at 1314.828 kb on + strand, within ulaG at 1314.829 kb on - strand, within ulaG at 1314.921 kb on - strand, within ulaG at 1314.921 kb on - strand, within ulaG at 1314.968 kb on - strand, within ulaG at 1314.986 kb on - strand, within ulaG at 1315.009 kb on + strand, within ulaG at 1315.012 kb on + strand, within ulaG at 1315.012 kb on + strand, within ulaG at 1315.012 kb on + strand, within ulaG at 1315.013 kb on - strand, within ulaG at 1315.013 kb on - strand, within ulaG at 1315.013 kb on - strand, within ulaG at 1315.021 kb on + strand, within ulaG at 1315.022 kb on - strand, within ulaG at 1315.022 kb on - strand, within ulaG at 1315.022 kb on - strand, within ulaG at 1315.022 kb on - strand, within ulaG at 1315.022 kb on - strand, within ulaG at 1315.055 kb on + strand, within ulaG at 1315.055 kb on + strand, within ulaG at 1315.056 kb on - strand, within ulaG at 1315.056 kb on - strand, within ulaG at 1315.134 kb on - strand, within ulaG at 1315.134 kb on - strand, within ulaG at 1315.134 kb on - strand, within ulaG at 1315.174 kb on + strand, within ulaG at 1315.174 kb on + strand, within ulaG at 1315.174 kb on + strand, within ulaG at 1315.183 kb on - strand, within ulaG at 1315.183 kb on - strand, within ulaG at 1315.252 kb on + strand, within ulaG at 1315.253 kb on - strand, within ulaG at 1315.253 kb on - strand, within ulaG at 1315.285 kb on + strand, within ulaG at 1315.318 kb on + strand, within ulaG at 1315.318 kb on + strand, within ulaG at 1315.318 kb on + strand, within ulaG at 1315.318 kb on + strand, within ulaG at 1315.318 kb on + strand, within ulaG at 1315.318 kb on + strand, within ulaG at 1315.319 kb on - strand, within ulaG at 1315.319 kb on - strand, within ulaG at 1315.319 kb on - strand, within ulaG at 1315.319 kb on - strand, within ulaG at 1315.319 kb on - strand, within ulaG at 1315.319 kb on - strand, within ulaG at 1315.329 kb on + strand, within ulaG at 1315.368 kb on - strand at 1315.379 kb on - strand at 1315.405 kb on - strand at 1315.433 kb on + strand at 1315.434 kb on - strand at 1315.444 kb on + strand at 1315.454 kb on + strand at 1315.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,312,597 - mhpA NIAGMN_06840 0.45 -0.4 1,312,598 + mhpA NIAGMN_06840 0.45 -0.1 1,312,663 - mhpA NIAGMN_06840 0.48 -0.7 1,312,698 - mhpA NIAGMN_06840 0.51 +0.5 1,312,813 - mhpA NIAGMN_06840 0.57 +0.6 1,312,883 + mhpA NIAGMN_06840 0.62 -0.9 1,312,883 + mhpA NIAGMN_06840 0.62 +0.3 1,312,883 + mhpA NIAGMN_06840 0.62 +0.6 1,312,883 + mhpA NIAGMN_06840 0.62 +2.9 1,312,883 + mhpA NIAGMN_06840 0.62 +0.6 1,312,883 + mhpA NIAGMN_06840 0.62 +0.1 1,312,884 - mhpA NIAGMN_06840 0.62 -0.7 1,312,884 - mhpA NIAGMN_06840 0.62 -0.8 1,312,884 - mhpA NIAGMN_06840 0.62 +1.4 1,312,884 - mhpA NIAGMN_06840 0.62 +1.1 1,312,884 - mhpA NIAGMN_06840 0.62 +0.8 1,312,884 - mhpA NIAGMN_06840 0.62 -0.5 1,312,884 - mhpA NIAGMN_06840 0.62 -0.2 1,312,884 - mhpA NIAGMN_06840 0.62 +1.3 1,312,884 - mhpA NIAGMN_06840 0.62 -0.1 1,312,884 - mhpA NIAGMN_06840 0.62 +1.1 1,312,887 + mhpA NIAGMN_06840 0.62 +0.9 1,312,887 + mhpA NIAGMN_06840 0.62 +1.3 1,312,888 - mhpA NIAGMN_06840 0.62 -0.6 1,312,888 - mhpA NIAGMN_06840 0.62 -0.7 1,312,896 + mhpA NIAGMN_06840 0.62 -0.3 1,312,897 - mhpA NIAGMN_06840 0.63 -0.7 1,312,917 + mhpA NIAGMN_06840 0.64 +0.1 1,313,227 - mhpA NIAGMN_06840 0.82 -0.9 1,313,281 - mhpA NIAGMN_06840 0.86 -3.6 1,313,284 - mhpA NIAGMN_06840 0.86 -1.1 1,313,347 - mhpA NIAGMN_06840 0.90 +0.7 1,313,347 - mhpA NIAGMN_06840 0.90 +0.5 1,313,423 + +0.4 1,313,423 + +1.1 1,313,512 + +0.5 1,313,513 - +1.0 1,313,564 + -0.1 1,313,565 - -0.2 1,313,889 - mhpR NIAGMN_06845 0.31 -1.6 1,313,889 - mhpR NIAGMN_06845 0.31 +0.3 1,313,915 - mhpR NIAGMN_06845 0.34 +0.8 1,313,915 - mhpR NIAGMN_06845 0.34 -0.1 1,314,024 + mhpR NIAGMN_06845 0.45 -0.3 1,314,236 + mhpR NIAGMN_06845 0.67 -2.5 1,314,267 - mhpR NIAGMN_06845 0.71 +0.9 1,314,299 + mhpR NIAGMN_06845 0.74 -0.9 1,314,401 + mhpR NIAGMN_06845 0.85 +1.9 1,314,401 + mhpR NIAGMN_06845 0.85 -1.5 1,314,401 + mhpR NIAGMN_06845 0.85 -0.7 1,314,401 + mhpR NIAGMN_06845 0.85 -0.6 1,314,401 + mhpR NIAGMN_06845 0.85 -0.3 1,314,401 + mhpR NIAGMN_06845 0.85 -0.0 1,314,402 - mhpR NIAGMN_06845 0.85 +0.9 1,314,403 + mhpR NIAGMN_06845 0.85 -1.3 1,314,403 + mhpR NIAGMN_06845 0.85 +0.9 1,314,404 - mhpR NIAGMN_06845 0.85 +0.6 1,314,456 + -0.8 1,314,457 - +1.1 1,314,502 + +0.9 1,314,503 - +0.1 1,314,558 + +0.3 1,314,621 + -0.5 1,314,638 + -0.2 1,314,638 + +1.0 1,314,639 - +1.1 1,314,695 - -1.6 1,314,701 + -0.1 1,314,702 - +0.9 1,314,801 + ulaG NIAGMN_06850 0.18 +1.9 1,314,808 - ulaG NIAGMN_06850 0.19 +0.3 1,314,808 - ulaG NIAGMN_06850 0.19 -0.1 1,314,828 + ulaG NIAGMN_06850 0.22 -0.9 1,314,829 - ulaG NIAGMN_06850 0.22 +0.9 1,314,921 - ulaG NIAGMN_06850 0.34 -0.6 1,314,921 - ulaG NIAGMN_06850 0.34 +0.6 1,314,968 - ulaG NIAGMN_06850 0.40 -0.9 1,314,986 - ulaG NIAGMN_06850 0.42 +1.1 1,315,009 + ulaG NIAGMN_06850 0.45 +1.0 1,315,012 + ulaG NIAGMN_06850 0.45 -1.0 1,315,012 + ulaG NIAGMN_06850 0.45 +0.1 1,315,012 + ulaG NIAGMN_06850 0.45 -0.8 1,315,013 - ulaG NIAGMN_06850 0.46 -0.6 1,315,013 - ulaG NIAGMN_06850 0.46 +0.6 1,315,013 - ulaG NIAGMN_06850 0.46 -1.1 1,315,021 + ulaG NIAGMN_06850 0.47 +0.7 1,315,022 - ulaG NIAGMN_06850 0.47 -0.8 1,315,022 - ulaG NIAGMN_06850 0.47 +1.3 1,315,022 - ulaG NIAGMN_06850 0.47 +0.1 1,315,022 - ulaG NIAGMN_06850 0.47 -0.7 1,315,022 - ulaG NIAGMN_06850 0.47 -1.3 1,315,055 + ulaG NIAGMN_06850 0.51 -0.1 1,315,055 + ulaG NIAGMN_06850 0.51 -1.1 1,315,056 - ulaG NIAGMN_06850 0.51 -0.1 1,315,056 - ulaG NIAGMN_06850 0.51 +0.7 1,315,134 - ulaG NIAGMN_06850 0.61 -1.6 1,315,134 - ulaG NIAGMN_06850 0.61 +1.9 1,315,134 - ulaG NIAGMN_06850 0.61 +1.5 1,315,174 + ulaG NIAGMN_06850 0.66 -0.7 1,315,174 + ulaG NIAGMN_06850 0.66 +1.3 1,315,174 + ulaG NIAGMN_06850 0.66 -1.7 1,315,183 - ulaG NIAGMN_06850 0.67 +0.3 1,315,183 - ulaG NIAGMN_06850 0.67 -1.5 1,315,252 + ulaG NIAGMN_06850 0.76 -0.9 1,315,253 - ulaG NIAGMN_06850 0.76 +0.1 1,315,253 - ulaG NIAGMN_06850 0.76 +0.2 1,315,285 + ulaG NIAGMN_06850 0.81 -0.1 1,315,318 + ulaG NIAGMN_06850 0.85 +0.1 1,315,318 + ulaG NIAGMN_06850 0.85 +0.5 1,315,318 + ulaG NIAGMN_06850 0.85 +1.6 1,315,318 + ulaG NIAGMN_06850 0.85 -0.3 1,315,318 + ulaG NIAGMN_06850 0.85 +0.9 1,315,318 + ulaG NIAGMN_06850 0.85 -0.3 1,315,319 - ulaG NIAGMN_06850 0.85 +0.9 1,315,319 - ulaG NIAGMN_06850 0.85 +0.2 1,315,319 - ulaG NIAGMN_06850 0.85 -0.7 1,315,319 - ulaG NIAGMN_06850 0.85 -1.6 1,315,319 - ulaG NIAGMN_06850 0.85 +1.0 1,315,319 - ulaG NIAGMN_06850 0.85 -0.8 1,315,329 + ulaG NIAGMN_06850 0.86 -1.3 1,315,368 - +1.3 1,315,379 - -1.3 1,315,405 - +0.5 1,315,433 + -0.5 1,315,434 - +0.5 1,315,444 + +0.8 1,315,454 + -0.0 1,315,466 - +0.9
Or see this region's nucleotide sequence