Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_06010 and ybbP are separated by 429 nucleotides ybbP and ybbA overlap by 4 nucleotides ybbA and tesA are separated by 0 nucleotides
NIAGMN_06010: NIAGMN_06010 - RHS element protein, at 1,119,787 to 1,123,983
_06010
NIAGMN_06015: ybbP - Uncharacterized ABC transporter permease YbbP, at 1,124,413 to 1,126,827
ybbP
NIAGMN_06020: ybbA - ABC transporter ATP-binding protein, at 1,126,824 to 1,127,510
ybbA
NIAGMN_06025: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,127,511 to 1,128,104
tesA
Position (kb) 1124
1125
1126
1127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1123.950 kb on + strand at 1123.986 kb on - strand at 1123.986 kb on - strand at 1124.073 kb on - strand at 1124.305 kb on + strand at 1124.401 kb on + strand at 1124.406 kb on - strand at 1124.652 kb on + strand at 1124.798 kb on - strand, within ybbP at 1124.798 kb on - strand, within ybbP at 1124.798 kb on - strand, within ybbP at 1124.920 kb on - strand, within ybbP at 1125.048 kb on + strand, within ybbP at 1125.135 kb on + strand, within ybbP at 1125.169 kb on - strand, within ybbP at 1125.181 kb on - strand, within ybbP at 1125.181 kb on - strand, within ybbP at 1125.181 kb on - strand, within ybbP at 1125.286 kb on + strand, within ybbP at 1125.435 kb on + strand, within ybbP at 1125.436 kb on - strand, within ybbP at 1125.499 kb on - strand, within ybbP at 1125.544 kb on + strand, within ybbP at 1125.589 kb on + strand, within ybbP at 1125.684 kb on - strand, within ybbP at 1125.716 kb on + strand, within ybbP at 1125.717 kb on - strand, within ybbP at 1125.717 kb on - strand, within ybbP at 1125.720 kb on + strand, within ybbP at 1125.720 kb on + strand, within ybbP at 1125.720 kb on + strand, within ybbP at 1125.720 kb on + strand, within ybbP at 1125.720 kb on + strand, within ybbP at 1125.720 kb on + strand, within ybbP at 1125.721 kb on - strand, within ybbP at 1125.721 kb on - strand, within ybbP at 1125.721 kb on - strand, within ybbP at 1125.721 kb on - strand, within ybbP at 1125.724 kb on + strand, within ybbP at 1125.725 kb on - strand, within ybbP at 1125.725 kb on - strand, within ybbP at 1125.727 kb on + strand, within ybbP at 1125.959 kb on - strand, within ybbP at 1125.959 kb on - strand, within ybbP at 1126.031 kb on + strand, within ybbP at 1126.032 kb on - strand, within ybbP at 1126.177 kb on - strand, within ybbP at 1126.187 kb on - strand, within ybbP at 1126.188 kb on - strand, within ybbP at 1126.202 kb on + strand, within ybbP at 1126.202 kb on + strand, within ybbP at 1126.451 kb on - strand, within ybbP at 1126.451 kb on - strand, within ybbP at 1126.502 kb on + strand, within ybbP at 1126.503 kb on - strand, within ybbP at 1126.511 kb on + strand, within ybbP at 1126.511 kb on + strand, within ybbP at 1126.515 kb on + strand, within ybbP at 1126.515 kb on + strand, within ybbP at 1126.516 kb on - strand, within ybbP at 1126.531 kb on - strand, within ybbP at 1126.531 kb on - strand, within ybbP at 1126.677 kb on + strand at 1126.678 kb on - strand at 1126.780 kb on + strand at 1126.781 kb on - strand at 1127.110 kb on - strand, within ybbA at 1127.110 kb on - strand, within ybbA at 1127.154 kb on - strand, within ybbA at 1127.285 kb on + strand, within ybbA at 1127.285 kb on + strand, within ybbA at 1127.285 kb on + strand, within ybbA at 1127.285 kb on + strand, within ybbA at 1127.285 kb on + strand, within ybbA at 1127.286 kb on - strand, within ybbA at 1127.286 kb on - strand, within ybbA at 1127.286 kb on - strand, within ybbA at 1127.286 kb on - strand, within ybbA at 1127.286 kb on - strand, within ybbA at 1127.290 kb on - strand, within ybbA at 1127.367 kb on - strand, within ybbA at 1127.475 kb on - strand at 1127.475 kb on - strand at 1127.642 kb on + strand, within tesA at 1127.642 kb on + strand, within tesA at 1127.643 kb on - strand, within tesA at 1127.643 kb on - strand, within tesA at 1127.643 kb on - strand, within tesA at 1127.643 kb on - strand, within tesA at 1127.655 kb on - strand, within tesA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,123,950 + -0.3 1,123,986 - +0.1 1,123,986 - -1.4 1,124,073 - -0.8 1,124,305 + -0.2 1,124,401 + +1.8 1,124,406 - +0.0 1,124,652 + -1.2 1,124,798 - ybbP NIAGMN_06015 0.16 +1.0 1,124,798 - ybbP NIAGMN_06015 0.16 -0.2 1,124,798 - ybbP NIAGMN_06015 0.16 -0.6 1,124,920 - ybbP NIAGMN_06015 0.21 -1.8 1,125,048 + ybbP NIAGMN_06015 0.26 +0.5 1,125,135 + ybbP NIAGMN_06015 0.30 -0.8 1,125,169 - ybbP NIAGMN_06015 0.31 +0.8 1,125,181 - ybbP NIAGMN_06015 0.32 -0.9 1,125,181 - ybbP NIAGMN_06015 0.32 -1.5 1,125,181 - ybbP NIAGMN_06015 0.32 +0.1 1,125,286 + ybbP NIAGMN_06015 0.36 +0.4 1,125,435 + ybbP NIAGMN_06015 0.42 -0.3 1,125,436 - ybbP NIAGMN_06015 0.42 -0.1 1,125,499 - ybbP NIAGMN_06015 0.45 +0.6 1,125,544 + ybbP NIAGMN_06015 0.47 +0.8 1,125,589 + ybbP NIAGMN_06015 0.49 +0.4 1,125,684 - ybbP NIAGMN_06015 0.53 +0.2 1,125,716 + ybbP NIAGMN_06015 0.54 -1.2 1,125,717 - ybbP NIAGMN_06015 0.54 +2.4 1,125,717 - ybbP NIAGMN_06015 0.54 +0.2 1,125,720 + ybbP NIAGMN_06015 0.54 +2.4 1,125,720 + ybbP NIAGMN_06015 0.54 +1.3 1,125,720 + ybbP NIAGMN_06015 0.54 -2.1 1,125,720 + ybbP NIAGMN_06015 0.54 +0.4 1,125,720 + ybbP NIAGMN_06015 0.54 +1.0 1,125,720 + ybbP NIAGMN_06015 0.54 +1.8 1,125,721 - ybbP NIAGMN_06015 0.54 -0.8 1,125,721 - ybbP NIAGMN_06015 0.54 +1.5 1,125,721 - ybbP NIAGMN_06015 0.54 -0.4 1,125,721 - ybbP NIAGMN_06015 0.54 +0.3 1,125,724 + ybbP NIAGMN_06015 0.54 -0.8 1,125,725 - ybbP NIAGMN_06015 0.54 -1.5 1,125,725 - ybbP NIAGMN_06015 0.54 +0.8 1,125,727 + ybbP NIAGMN_06015 0.54 -0.6 1,125,959 - ybbP NIAGMN_06015 0.64 +0.1 1,125,959 - ybbP NIAGMN_06015 0.64 +2.3 1,126,031 + ybbP NIAGMN_06015 0.67 -0.6 1,126,032 - ybbP NIAGMN_06015 0.67 -0.5 1,126,177 - ybbP NIAGMN_06015 0.73 -1.5 1,126,187 - ybbP NIAGMN_06015 0.73 -0.8 1,126,188 - ybbP NIAGMN_06015 0.73 +0.8 1,126,202 + ybbP NIAGMN_06015 0.74 +2.0 1,126,202 + ybbP NIAGMN_06015 0.74 -0.5 1,126,451 - ybbP NIAGMN_06015 0.84 +1.8 1,126,451 - ybbP NIAGMN_06015 0.84 -0.3 1,126,502 + ybbP NIAGMN_06015 0.87 +1.4 1,126,503 - ybbP NIAGMN_06015 0.87 -1.4 1,126,511 + ybbP NIAGMN_06015 0.87 -1.4 1,126,511 + ybbP NIAGMN_06015 0.87 +1.4 1,126,515 + ybbP NIAGMN_06015 0.87 -0.3 1,126,515 + ybbP NIAGMN_06015 0.87 +1.2 1,126,516 - ybbP NIAGMN_06015 0.87 +0.2 1,126,531 - ybbP NIAGMN_06015 0.88 +1.2 1,126,531 - ybbP NIAGMN_06015 0.88 -0.5 1,126,677 + -1.5 1,126,678 - +1.2 1,126,780 + +0.2 1,126,781 - -0.1 1,127,110 - ybbA NIAGMN_06020 0.42 +0.5 1,127,110 - ybbA NIAGMN_06020 0.42 +0.0 1,127,154 - ybbA NIAGMN_06020 0.48 +0.8 1,127,285 + ybbA NIAGMN_06020 0.67 +1.8 1,127,285 + ybbA NIAGMN_06020 0.67 +0.2 1,127,285 + ybbA NIAGMN_06020 0.67 +0.0 1,127,285 + ybbA NIAGMN_06020 0.67 +0.2 1,127,285 + ybbA NIAGMN_06020 0.67 +1.5 1,127,286 - ybbA NIAGMN_06020 0.67 -0.6 1,127,286 - ybbA NIAGMN_06020 0.67 +0.6 1,127,286 - ybbA NIAGMN_06020 0.67 +0.8 1,127,286 - ybbA NIAGMN_06020 0.67 -1.0 1,127,286 - ybbA NIAGMN_06020 0.67 +1.2 1,127,290 - ybbA NIAGMN_06020 0.68 +0.8 1,127,367 - ybbA NIAGMN_06020 0.79 -1.0 1,127,475 - +1.1 1,127,475 - +0.0 1,127,642 + tesA NIAGMN_06025 0.22 -0.4 1,127,642 + tesA NIAGMN_06025 0.22 -0.2 1,127,643 - tesA NIAGMN_06025 0.22 -1.2 1,127,643 - tesA NIAGMN_06025 0.22 -0.5 1,127,643 - tesA NIAGMN_06025 0.22 -1.3 1,127,643 - tesA NIAGMN_06025 0.22 +0.3 1,127,655 - tesA NIAGMN_06025 0.24 -1.9
Or see this region's nucleotide sequence