Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_04590 and NIAGMN_04595 are separated by 674 nucleotides NIAGMN_04595 and NIAGMN_04600 overlap by 13 nucleotides NIAGMN_04600 and rrrD overlap by 4 nucleotides rrrD and NIAGMN_04610 overlap by 1 nucleotides
NIAGMN_04590: NIAGMN_04590 - Bacteriophage DNA packaging protein terminase, small subunit, at 836,752 to 837,243
_04590
NIAGMN_04595: NIAGMN_04595 - Putative bacteriophage protein (Gene 65), at 837,918 to 838,070
_04595
NIAGMN_04600: NIAGMN_04600 - lysis protein, at 838,058 to 838,525
_04600
NIAGMN_04605: rrrD - lysozyme RrrD, at 838,522 to 839,019
rrrD
NIAGMN_04610: NIAGMN_04610 - holin, at 839,019 to 839,234
_04610
Position (kb) 838
839 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.074 kb on - strand, within NIAGMN_04590 at 837.210 kb on + strand at 837.211 kb on - strand at 837.243 kb on + strand at 837.262 kb on + strand at 837.490 kb on - strand at 837.532 kb on + strand at 837.532 kb on + strand at 837.773 kb on + strand at 837.789 kb on + strand at 837.790 kb on - strand at 837.790 kb on - strand at 837.804 kb on - strand at 837.808 kb on + strand at 837.809 kb on - strand at 837.809 kb on - strand at 837.810 kb on + strand at 837.810 kb on + strand at 837.810 kb on + strand at 837.811 kb on - strand at 837.811 kb on - strand at 837.851 kb on - strand at 837.851 kb on - strand at 837.885 kb on - strand at 838.016 kb on + strand, within NIAGMN_04595 at 838.016 kb on + strand, within NIAGMN_04595 at 838.050 kb on + strand, within NIAGMN_04595 at 838.056 kb on + strand at 838.084 kb on - strand at 838.323 kb on + strand, within NIAGMN_04600 at 838.427 kb on - strand, within NIAGMN_04600 at 838.504 kb on + strand at 838.639 kb on - strand, within rrrD at 838.713 kb on - strand, within rrrD at 838.739 kb on - strand, within rrrD at 838.792 kb on - strand, within rrrD at 838.867 kb on + strand, within rrrD at 838.868 kb on - strand, within rrrD at 838.901 kb on - strand, within rrrD at 839.045 kb on + strand, within NIAGMN_04610 at 839.284 kb on + strand at 839.285 kb on - strand at 839.317 kb on - strand at 839.317 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.355 kb on + strand at 839.381 kb on + strand at 839.381 kb on + strand at 839.385 kb on + strand at 839.385 kb on + strand at 839.385 kb on + strand at 839.479 kb on - strand at 839.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 837,074 - NIAGMN_04590 0.65 -1.2 837,210 + +0.8 837,211 - -1.9 837,243 + +0.6 837,262 + -0.3 837,490 - -2.3 837,532 + -1.3 837,532 + +0.1 837,773 + -0.1 837,789 + +1.1 837,790 - +1.0 837,790 - -1.9 837,804 - -2.4 837,808 + +1.0 837,809 - -1.0 837,809 - +0.5 837,810 + -0.3 837,810 + -0.1 837,810 + -0.9 837,811 - +0.4 837,811 - +2.2 837,851 - +0.1 837,851 - -0.9 837,885 - -1.5 838,016 + NIAGMN_04595 0.64 +0.5 838,016 + NIAGMN_04595 0.64 +1.1 838,050 + NIAGMN_04595 0.86 +0.3 838,056 + -0.4 838,084 - +0.5 838,323 + NIAGMN_04600 0.57 -1.1 838,427 - NIAGMN_04600 0.79 +1.7 838,504 + -0.1 838,639 - rrrD NIAGMN_04605 0.23 -0.3 838,713 - rrrD NIAGMN_04605 0.38 +0.1 838,739 - rrrD NIAGMN_04605 0.44 -0.3 838,792 - rrrD NIAGMN_04605 0.54 -0.8 838,867 + rrrD NIAGMN_04605 0.69 +0.7 838,868 - rrrD NIAGMN_04605 0.69 +0.1 838,901 - rrrD NIAGMN_04605 0.76 -0.8 839,045 + NIAGMN_04610 0.12 +0.7 839,284 + -1.6 839,285 - +0.1 839,317 - +0.9 839,317 - +0.3 839,319 + -0.6 839,319 + -0.9 839,355 + +2.3 839,381 + -0.5 839,381 + -0.3 839,385 + -1.5 839,385 + -0.6 839,385 + -0.0 839,479 - +0.1 839,513 - -1.6
Or see this region's nucleotide sequence