Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clpA and clpS are separated by 30 nucleotides clpS and yljB are separated by 98 nucleotides yljB and cspD are separated by 149 nucleotides cspD and macB are separated by 72 nucleotides
NIAGMN_03825: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 684,425 to 686,701
clpA
NIAGMN_03830: clpS - ATP-dependent Clp protease adapter ClpS, at 686,732 to 687,052
clpS
NIAGMN_03835: yljB - Protein YljB, at 687,151 to 687,225
yljB
NIAGMN_03840: cspD - cold shock-like protein CspD, at 687,375 to 687,599
cspD
NIAGMN_03845: macB - macrolide ABC transporter ATP-binding protein/permease MacB, at 687,672 to 689,618
macB
Position (kb) 687
688 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 686.198 kb on - strand, within clpA at 686.198 kb on - strand, within clpA at 686.198 kb on - strand, within clpA at 686.290 kb on + strand, within clpA at 686.291 kb on - strand, within clpA at 686.291 kb on - strand, within clpA at 686.327 kb on - strand, within clpA at 686.338 kb on - strand, within clpA at 686.338 kb on - strand, within clpA at 686.369 kb on - strand, within clpA at 686.673 kb on - strand at 686.673 kb on - strand at 686.702 kb on - strand at 686.745 kb on - strand at 686.750 kb on - strand at 686.782 kb on - strand, within clpS at 686.889 kb on - strand, within clpS at 686.889 kb on - strand, within clpS at 686.889 kb on - strand, within clpS at 686.896 kb on - strand, within clpS at 686.896 kb on - strand, within clpS at 686.943 kb on + strand, within clpS at 686.944 kb on - strand, within clpS at 686.958 kb on - strand, within clpS at 686.961 kb on - strand, within clpS at 686.971 kb on - strand, within clpS at 686.971 kb on - strand, within clpS at 686.971 kb on - strand, within clpS at 686.971 kb on - strand, within clpS at 686.974 kb on + strand, within clpS at 686.974 kb on + strand, within clpS at 686.975 kb on - strand, within clpS at 686.975 kb on - strand, within clpS at 686.975 kb on - strand, within clpS at 687.112 kb on + strand at 687.113 kb on - strand at 687.130 kb on - strand at 687.130 kb on - strand at 687.142 kb on - strand at 687.145 kb on + strand at 687.146 kb on - strand at 687.146 kb on - strand at 687.150 kb on - strand at 687.150 kb on - strand at 687.226 kb on - strand at 687.226 kb on - strand at 687.226 kb on - strand at 687.268 kb on - strand at 687.268 kb on - strand at 687.282 kb on + strand at 687.283 kb on - strand at 687.288 kb on + strand at 687.288 kb on + strand at 687.332 kb on + strand at 687.333 kb on - strand at 687.342 kb on + strand at 687.342 kb on + strand at 687.343 kb on - strand at 687.343 kb on - strand at 687.348 kb on + strand at 687.348 kb on + strand at 687.348 kb on + strand at 687.349 kb on - strand at 687.349 kb on - strand at 687.392 kb on + strand at 687.393 kb on - strand at 687.393 kb on - strand at 687.465 kb on + strand, within cspD at 687.499 kb on + strand, within cspD at 687.564 kb on - strand, within cspD at 687.581 kb on - strand at 687.597 kb on + strand at 687.618 kb on + strand at 687.619 kb on - strand at 687.619 kb on - strand at 687.625 kb on + strand at 687.626 kb on - strand at 687.626 kb on - strand at 687.662 kb on - strand at 687.694 kb on - strand at 687.694 kb on - strand at 687.694 kb on - strand at 687.739 kb on - strand at 687.841 kb on - strand at 687.841 kb on - strand at 687.937 kb on - strand, within macB at 687.937 kb on - strand, within macB at 687.937 kb on - strand, within macB at 687.937 kb on - strand, within macB at 687.937 kb on - strand, within macB at 687.937 kb on - strand, within macB at 687.989 kb on + strand, within macB at 687.990 kb on - strand, within macB at 687.990 kb on - strand, within macB at 687.990 kb on - strand, within macB at 688.018 kb on - strand, within macB at 688.018 kb on - strand, within macB at 688.018 kb on - strand, within macB at 688.046 kb on + strand, within macB at 688.062 kb on - strand, within macB at 688.062 kb on - strand, within macB at 688.062 kb on - strand, within macB at 688.124 kb on + strand, within macB at 688.125 kb on - strand, within macB at 688.202 kb on + strand, within macB at 688.203 kb on - strand, within macB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 686,198 - clpA NIAGMN_03825 0.78 -0.9 686,198 - clpA NIAGMN_03825 0.78 -0.3 686,198 - clpA NIAGMN_03825 0.78 +0.2 686,290 + clpA NIAGMN_03825 0.82 +1.7 686,291 - clpA NIAGMN_03825 0.82 -0.7 686,291 - clpA NIAGMN_03825 0.82 +1.3 686,327 - clpA NIAGMN_03825 0.84 +2.2 686,338 - clpA NIAGMN_03825 0.84 -0.0 686,338 - clpA NIAGMN_03825 0.84 -0.6 686,369 - clpA NIAGMN_03825 0.85 +0.7 686,673 - -0.3 686,673 - +3.2 686,702 - +0.7 686,745 - -0.9 686,750 - +0.7 686,782 - clpS NIAGMN_03830 0.16 +0.2 686,889 - clpS NIAGMN_03830 0.49 -0.4 686,889 - clpS NIAGMN_03830 0.49 -0.1 686,889 - clpS NIAGMN_03830 0.49 -0.2 686,896 - clpS NIAGMN_03830 0.51 +0.5 686,896 - clpS NIAGMN_03830 0.51 +1.7 686,943 + clpS NIAGMN_03830 0.66 -0.5 686,944 - clpS NIAGMN_03830 0.66 +0.1 686,958 - clpS NIAGMN_03830 0.70 +1.1 686,961 - clpS NIAGMN_03830 0.71 +0.1 686,971 - clpS NIAGMN_03830 0.74 -1.3 686,971 - clpS NIAGMN_03830 0.74 -0.3 686,971 - clpS NIAGMN_03830 0.74 -1.5 686,971 - clpS NIAGMN_03830 0.74 -2.4 686,974 + clpS NIAGMN_03830 0.75 -0.2 686,974 + clpS NIAGMN_03830 0.75 +0.1 686,975 - clpS NIAGMN_03830 0.76 +0.7 686,975 - clpS NIAGMN_03830 0.76 -0.8 686,975 - clpS NIAGMN_03830 0.76 +0.7 687,112 + +1.1 687,113 - +0.1 687,130 - -0.5 687,130 - +0.8 687,142 - +0.9 687,145 + +1.0 687,146 - -0.7 687,146 - -0.7 687,150 - +1.0 687,150 - +0.7 687,226 - -0.2 687,226 - +2.7 687,226 - -1.5 687,268 - +0.1 687,268 - -0.5 687,282 + +0.7 687,283 - +0.1 687,288 + -0.3 687,288 + +0.1 687,332 + -0.7 687,333 - +1.7 687,342 + +1.7 687,342 + +0.1 687,343 - +0.5 687,343 - -2.0 687,348 + -0.3 687,348 + -0.9 687,348 + -1.0 687,349 - -0.3 687,349 - -0.8 687,392 + +0.7 687,393 - +0.1 687,393 - -0.8 687,465 + cspD NIAGMN_03840 0.40 -1.9 687,499 + cspD NIAGMN_03840 0.55 +0.8 687,564 - cspD NIAGMN_03840 0.84 +0.1 687,581 - +0.7 687,597 + +1.6 687,618 + -0.8 687,619 - +0.1 687,619 - -0.1 687,625 + +0.3 687,626 - -0.7 687,626 - -0.3 687,662 - -0.3 687,694 - +0.2 687,694 - +0.2 687,694 - -0.9 687,739 - +1.2 687,841 - -1.2 687,841 - +0.8 687,937 - macB NIAGMN_03845 0.14 +1.7 687,937 - macB NIAGMN_03845 0.14 +0.1 687,937 - macB NIAGMN_03845 0.14 +0.8 687,937 - macB NIAGMN_03845 0.14 -0.2 687,937 - macB NIAGMN_03845 0.14 +0.9 687,937 - macB NIAGMN_03845 0.14 -0.6 687,989 + macB NIAGMN_03845 0.16 +0.1 687,990 - macB NIAGMN_03845 0.16 +0.8 687,990 - macB NIAGMN_03845 0.16 -0.6 687,990 - macB NIAGMN_03845 0.16 -0.1 688,018 - macB NIAGMN_03845 0.18 +0.2 688,018 - macB NIAGMN_03845 0.18 +0.9 688,018 - macB NIAGMN_03845 0.18 -0.3 688,046 + macB NIAGMN_03845 0.19 -0.3 688,062 - macB NIAGMN_03845 0.20 -0.1 688,062 - macB NIAGMN_03845 0.20 +1.1 688,062 - macB NIAGMN_03845 0.20 -1.7 688,124 + macB NIAGMN_03845 0.23 +0.2 688,125 - macB NIAGMN_03845 0.23 -1.3 688,202 + macB NIAGMN_03845 0.27 -0.3 688,203 - macB NIAGMN_03845 0.27 -0.3
Or see this region's nucleotide sequence