Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02675

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_02670 and NIAGMN_02675 are separated by 255 nucleotidesNIAGMN_02675 and NIAGMN_02680 are separated by 159 nucleotidesNIAGMN_02680 and NIAGMN_02685 are separated by 220 nucleotides NIAGMN_02670: NIAGMN_02670 - holin, at 468,418 to 468,624 _02670 NIAGMN_02675: NIAGMN_02675 - hypothetical protein, at 468,880 to 469,152 _02675 NIAGMN_02680: NIAGMN_02680 - lysozyme, at 469,312 to 469,845 _02680 NIAGMN_02685: NIAGMN_02685 - hypothetical protein, at 470,066 to 470,179 _02685 Position (kb) 468 469 470Strain fitness (log2 ratio) -1 0 1 2at 468.285 kb on - strandat 468.524 kb on + strand, within NIAGMN_02670at 468.622 kb on + strandat 468.853 kb on + strandat 469.039 kb on - strand, within NIAGMN_02675at 469.197 kb on - strandat 469.851 kb on + strandat 469.920 kb on - strandat 470.004 kb on - strandat 470.018 kb on - strandat 470.106 kb on + strand, within NIAGMN_02685at 470.134 kb on + strand, within NIAGMN_02685

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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468,285 - +1.7
468,524 + NIAGMN_02670 0.51 +0.7
468,622 + +1.0
468,853 + +2.1
469,039 - NIAGMN_02675 0.58 +2.7
469,197 - +0.3
469,851 + +1.7
469,920 - +1.7
470,004 - +0.1
470,018 - -1.1
470,106 + NIAGMN_02685 0.35 -1.2
470,134 + NIAGMN_02685 0.60 -0.6

Or see this region's nucleotide sequence