Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02325

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyedK and yedL are separated by 110 nucleotidesyedL and espR3 are separated by 137 nucleotidesespR3 and espR4 are separated by 818 nucleotides NIAGMN_02315: yedK - Abasic site processing protein YedK, at 407,931 to 408,599 yedK NIAGMN_02320: yedL - Uncharacterized N-acetyltransferase YedL, at 408,710 to 409,189 yedL NIAGMN_02325: espR3 - Type III secretion system effector espR3, at 409,327 to 410,466 espR3 NIAGMN_02330: espR4 - T3SS effector leucine-rich repeat protein EspR4, at 411,285 to 412,424 espR4 Position (kb) 409 410 411Strain fitness (log2 ratio) -1 0 1at 408.400 kb on + strand, within yedKat 409.922 kb on - strand, within espR3at 411.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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408,400 + yedK NIAGMN_02315 0.70 +0.8
409,922 - espR3 NIAGMN_02325 0.52 +0.2
411,221 - +0.8

Or see this region's nucleotide sequence