Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02320

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyedF and yedK are separated by 108 nucleotidesyedK and yedL are separated by 110 nucleotidesyedL and espR3 are separated by 137 nucleotides NIAGMN_02310: yedF - sulfurtransferase-like selenium metabolism protein YedF, at 407,589 to 407,822 yedF NIAGMN_02315: yedK - Abasic site processing protein YedK, at 407,931 to 408,599 yedK NIAGMN_02320: yedL - Uncharacterized N-acetyltransferase YedL, at 408,710 to 409,189 yedL NIAGMN_02325: espR3 - Type III secretion system effector espR3, at 409,327 to 410,466 espR3 Position (kb) 408 409 410Strain fitness (log2 ratio) -1 0 1 2at 407.805 kb on + strandat 407.821 kb on - strandat 407.870 kb on - strandat 407.912 kb on - strandat 407.931 kb on - strandat 407.931 kb on - strandat 408.037 kb on - strand, within yedKat 408.186 kb on - strand, within yedKat 408.186 kb on - strand, within yedKat 408.400 kb on + strand, within yedKat 409.922 kb on - strand, within espR3

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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407,805 + +0.8
407,821 - +0.6
407,870 - -0.4
407,912 - +0.4
407,931 - -1.1
407,931 - -0.9
408,037 - yedK NIAGMN_02315 0.16 +0.0
408,186 - yedK NIAGMN_02315 0.38 +1.8
408,186 - yedK NIAGMN_02315 0.38 -0.9
408,400 + yedK NIAGMN_02315 0.70 +0.8
409,922 - espR3 NIAGMN_02325 0.52 +0.2

Or see this region's nucleotide sequence