Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03120

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03117 and MPMX26_03118 are separated by 11 nucleotidesMPMX26_03118 and MPMX26_03119 are separated by 20 nucleotidesMPMX26_03119 and MPMX26_03120 are separated by 26 nucleotidesMPMX26_03120 and MPMX26_03121 are separated by 603 nucleotides MPMX26_03117: MPMX26_03117 - Copper-exporting P-type ATPase, at 30,290 to 32,665 _03117 MPMX26_03118: MPMX26_03118 - hypothetical protein, at 32,677 to 33,327 _03118 MPMX26_03119: MPMX26_03119 - hypothetical protein, at 33,348 to 33,596 _03119 MPMX26_03120: MPMX26_03120 - hypothetical protein, at 33,623 to 34,054 _03120 MPMX26_03121: MPMX26_03121 - hypothetical protein, at 34,658 to 34,900 _03121 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 32.624 kb on - strandat 32.624 kb on - strandat 32.624 kb on - strandat 32.723 kb on - strandat 32.733 kb on - strandat 32.740 kb on - strandat 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.748 kb on - strand, within MPMX26_03118at 32.832 kb on - strand, within MPMX26_03118at 32.956 kb on + strand, within MPMX26_03118at 32.959 kb on - strand, within MPMX26_03118at 33.063 kb on + strand, within MPMX26_03118at 33.156 kb on - strand, within MPMX26_03118at 33.302 kb on + strandat 33.474 kb on - strand, within MPMX26_03119at 33.519 kb on - strand, within MPMX26_03119at 33.519 kb on - strand, within MPMX26_03119at 33.532 kb on - strand, within MPMX26_03119at 33.533 kb on - strand, within MPMX26_03119at 33.642 kb on + strandat 33.648 kb on - strandat 33.648 kb on - strandat 33.650 kb on - strandat 33.650 kb on - strandat 33.650 kb on - strandat 33.650 kb on - strandat 33.658 kb on - strandat 33.658 kb on - strandat 33.662 kb on - strandat 33.741 kb on - strand, within MPMX26_03120at 33.763 kb on - strand, within MPMX26_03120at 33.769 kb on - strand, within MPMX26_03120at 33.769 kb on - strand, within MPMX26_03120at 33.788 kb on - strand, within MPMX26_03120at 33.822 kb on - strand, within MPMX26_03120at 33.869 kb on - strand, within MPMX26_03120at 33.869 kb on - strand, within MPMX26_03120at 33.869 kb on - strand, within MPMX26_03120at 33.903 kb on - strand, within MPMX26_03120at 34.101 kb on - strandat 34.106 kb on - strandat 34.571 kb on - strandat 34.589 kb on - strandat 34.589 kb on - strandat 34.589 kb on - strandat 34.589 kb on - strandat 34.597 kb on - strandat 34.597 kb on - strandat 34.597 kb on - strandat 34.599 kb on - strandat 34.599 kb on - strandat 34.607 kb on - strandat 34.607 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.647 kb on - strandat 34.720 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.812 kb on - strand, within MPMX26_03121at 34.859 kb on - strand, within MPMX26_03121

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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32,624 - +0.4
32,624 - -1.0
32,624 - +0.4
32,723 - -1.7
32,733 - +0.2
32,740 - -0.3
32,748 - MPMX26_03118 0.11 +0.4
32,748 - MPMX26_03118 0.11 +0.0
32,748 - MPMX26_03118 0.11 +0.4
32,748 - MPMX26_03118 0.11 +1.7
32,748 - MPMX26_03118 0.11 +1.6
32,748 - MPMX26_03118 0.11 +0.0
32,748 - MPMX26_03118 0.11 +0.4
32,748 - MPMX26_03118 0.11 -0.7
32,748 - MPMX26_03118 0.11 +0.1
32,748 - MPMX26_03118 0.11 +1.0
32,748 - MPMX26_03118 0.11 +1.4
32,832 - MPMX26_03118 0.24 +0.8
32,956 + MPMX26_03118 0.43 -0.6
32,959 - MPMX26_03118 0.43 +0.2
33,063 + MPMX26_03118 0.59 -0.2
33,156 - MPMX26_03118 0.74 +0.9
33,302 + +0.7
33,474 - MPMX26_03119 0.51 -0.7
33,519 - MPMX26_03119 0.69 -0.2
33,519 - MPMX26_03119 0.69 +0.8
33,532 - MPMX26_03119 0.74 +0.1
33,533 - MPMX26_03119 0.74 -0.2
33,642 + -0.9
33,648 - -1.0
33,648 - -0.3
33,650 - -1.9
33,650 - -0.2
33,650 - -0.0
33,650 - +0.3
33,658 - +0.4
33,658 - +1.4
33,662 - +0.6
33,741 - MPMX26_03120 0.27 -0.6
33,763 - MPMX26_03120 0.32 +1.3
33,769 - MPMX26_03120 0.34 -0.5
33,769 - MPMX26_03120 0.34 +1.3
33,788 - MPMX26_03120 0.38 +0.1
33,822 - MPMX26_03120 0.46 +2.2
33,869 - MPMX26_03120 0.57 +0.3
33,869 - MPMX26_03120 0.57 +0.2
33,869 - MPMX26_03120 0.57 +0.8
33,903 - MPMX26_03120 0.65 +0.8
34,101 - +0.3
34,106 - +0.8
34,571 - +0.6
34,589 - -0.2
34,589 - -0.1
34,589 - -0.3
34,589 - -0.5
34,597 - -0.1
34,597 - +0.3
34,597 - +1.0
34,599 - +1.2
34,599 - +0.6
34,607 - -0.3
34,607 - -0.6
34,617 - +0.6
34,617 - +0.5
34,617 - -0.8
34,617 - -2.7
34,617 - +0.6
34,647 - +0.4
34,720 - MPMX26_03121 0.26 +0.2
34,727 - MPMX26_03121 0.28 +1.0
34,727 - MPMX26_03121 0.28 -0.9
34,727 - MPMX26_03121 0.28 +0.3
34,727 - MPMX26_03121 0.28 +0.4
34,812 - MPMX26_03121 0.63 +0.1
34,859 - MPMX26_03121 0.83 -0.3

Or see this region's nucleotide sequence