Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02168

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02166 and MPMX26_02167 are separated by 27 nucleotidesMPMX26_02167 and MPMX26_02168 are separated by 86 nucleotidesMPMX26_02168 and MPMX26_02169 overlap by 4 nucleotidesMPMX26_02169 and MPMX26_02170 are separated by 11 nucleotides MPMX26_02166: MPMX26_02166 - Sulfate-binding protein, at 2,221,781 to 2,222,794 _02166 MPMX26_02167: MPMX26_02167 - hypothetical protein, at 2,222,822 to 2,223,433 _02167 MPMX26_02168: MPMX26_02168 - Sulfate transport system permease protein CysT, at 2,223,520 to 2,224,353 _02168 MPMX26_02169: MPMX26_02169 - Sulfate transport system permease protein CysW, at 2,224,350 to 2,225,243 _02169 MPMX26_02170: MPMX26_02170 - Sulfate/thiosulfate import ATP-binding protein CysA, at 2,225,255 to 2,226,316 _02170 Position (kb) 2223 2224 2225Strain fitness (log2 ratio) -2 -1 0 1 2at 2223.514 kb on + strandat 2223.514 kb on + strandat 2223.533 kb on + strandat 2223.585 kb on + strandat 2223.585 kb on + strandat 2223.585 kb on + strandat 2223.595 kb on + strandat 2223.616 kb on + strand, within MPMX26_02168at 2223.831 kb on + strand, within MPMX26_02168at 2223.886 kb on + strand, within MPMX26_02168at 2223.938 kb on + strand, within MPMX26_02168at 2223.997 kb on + strand, within MPMX26_02168at 2223.997 kb on + strand, within MPMX26_02168at 2223.997 kb on + strand, within MPMX26_02168at 2224.039 kb on + strand, within MPMX26_02168at 2224.102 kb on + strand, within MPMX26_02168at 2224.141 kb on + strand, within MPMX26_02168at 2224.144 kb on + strand, within MPMX26_02168at 2224.144 kb on + strand, within MPMX26_02168at 2224.146 kb on + strand, within MPMX26_02168at 2224.228 kb on + strand, within MPMX26_02168at 2224.309 kb on + strandat 2224.314 kb on + strandat 2224.353 kb on + strandat 2224.409 kb on + strandat 2224.419 kb on + strandat 2224.434 kb on + strandat 2224.436 kb on + strandat 2224.461 kb on + strand, within MPMX26_02169at 2224.471 kb on + strand, within MPMX26_02169at 2224.517 kb on + strand, within MPMX26_02169at 2224.517 kb on + strand, within MPMX26_02169at 2224.544 kb on + strand, within MPMX26_02169at 2224.630 kb on + strand, within MPMX26_02169at 2224.632 kb on + strand, within MPMX26_02169at 2224.632 kb on + strand, within MPMX26_02169at 2224.669 kb on + strand, within MPMX26_02169at 2224.669 kb on + strand, within MPMX26_02169at 2224.669 kb on + strand, within MPMX26_02169at 2224.669 kb on + strand, within MPMX26_02169at 2224.692 kb on + strand, within MPMX26_02169at 2224.805 kb on + strand, within MPMX26_02169at 2224.835 kb on + strand, within MPMX26_02169at 2224.852 kb on + strand, within MPMX26_02169at 2224.922 kb on + strand, within MPMX26_02169at 2224.922 kb on + strand, within MPMX26_02169at 2224.922 kb on + strand, within MPMX26_02169at 2224.935 kb on + strand, within MPMX26_02169at 2224.977 kb on + strand, within MPMX26_02169at 2225.012 kb on + strand, within MPMX26_02169at 2225.034 kb on + strand, within MPMX26_02169at 2225.049 kb on + strand, within MPMX26_02169at 2225.049 kb on + strand, within MPMX26_02169at 2225.142 kb on + strand, within MPMX26_02169at 2225.142 kb on + strand, within MPMX26_02169at 2225.142 kb on + strand, within MPMX26_02169at 2225.142 kb on + strand, within MPMX26_02169at 2225.216 kb on + strandat 2225.336 kb on + strandat 2225.353 kb on + strandat 2225.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,223,514 + -1.4
2,223,514 + -1.0
2,223,533 + -1.1
2,223,585 + -0.9
2,223,585 + -1.0
2,223,585 + -1.0
2,223,595 + -0.7
2,223,616 + MPMX26_02168 0.12 -0.9
2,223,831 + MPMX26_02168 0.37 -0.7
2,223,886 + MPMX26_02168 0.44 -1.2
2,223,938 + MPMX26_02168 0.50 +0.4
2,223,997 + MPMX26_02168 0.57 -1.0
2,223,997 + MPMX26_02168 0.57 -0.8
2,223,997 + MPMX26_02168 0.57 -1.9
2,224,039 + MPMX26_02168 0.62 -1.1
2,224,102 + MPMX26_02168 0.70 +0.1
2,224,141 + MPMX26_02168 0.74 -0.2
2,224,144 + MPMX26_02168 0.75 +0.2
2,224,144 + MPMX26_02168 0.75 -0.1
2,224,146 + MPMX26_02168 0.75 +0.5
2,224,228 + MPMX26_02168 0.85 -0.3
2,224,309 + +0.4
2,224,314 + +0.3
2,224,353 + -0.5
2,224,409 + -0.0
2,224,419 + -0.3
2,224,434 + -0.1
2,224,436 + -0.1
2,224,461 + MPMX26_02169 0.12 +2.1
2,224,471 + MPMX26_02169 0.14 -1.2
2,224,517 + MPMX26_02169 0.19 +0.2
2,224,517 + MPMX26_02169 0.19 -0.2
2,224,544 + MPMX26_02169 0.22 +0.0
2,224,630 + MPMX26_02169 0.31 +0.4
2,224,632 + MPMX26_02169 0.32 +0.6
2,224,632 + MPMX26_02169 0.32 -0.3
2,224,669 + MPMX26_02169 0.36 -0.5
2,224,669 + MPMX26_02169 0.36 +0.1
2,224,669 + MPMX26_02169 0.36 -0.2
2,224,669 + MPMX26_02169 0.36 +0.3
2,224,692 + MPMX26_02169 0.38 -0.1
2,224,805 + MPMX26_02169 0.51 +0.6
2,224,835 + MPMX26_02169 0.54 +0.2
2,224,852 + MPMX26_02169 0.56 +0.4
2,224,922 + MPMX26_02169 0.64 +0.3
2,224,922 + MPMX26_02169 0.64 +0.5
2,224,922 + MPMX26_02169 0.64 +0.3
2,224,935 + MPMX26_02169 0.65 +0.1
2,224,977 + MPMX26_02169 0.70 -0.2
2,225,012 + MPMX26_02169 0.74 +0.5
2,225,034 + MPMX26_02169 0.77 +0.3
2,225,049 + MPMX26_02169 0.78 -0.2
2,225,049 + MPMX26_02169 0.78 +0.1
2,225,142 + MPMX26_02169 0.89 +1.0
2,225,142 + MPMX26_02169 0.89 -0.2
2,225,142 + MPMX26_02169 0.89 +0.0
2,225,142 + MPMX26_02169 0.89 -0.7
2,225,216 + +0.4
2,225,336 + -1.1
2,225,353 + -0.5
2,225,353 + -1.3

Or see this region's nucleotide sequence