Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02140

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02139 and MPMX26_02140 are separated by 263 nucleotidesMPMX26_02140 and MPMX26_02141 are separated by 131 nucleotidesMPMX26_02141 and MPMX26_02142 are separated by 123 nucleotides MPMX26_02139: MPMX26_02139 - Glyceraldehyde-3-phosphate dehydrogenase-like protein, at 2,196,129 to 2,197,586 _02139 MPMX26_02140: MPMX26_02140 - Protein RarD, at 2,197,850 to 2,198,785 _02140 MPMX26_02141: MPMX26_02141 - Outer membrane lipoprotein Blc, at 2,198,917 to 2,199,501 _02141 MPMX26_02142: MPMX26_02142 - UvrABC system protein B, at 2,199,625 to 2,201,646 _02142 Position (kb) 2197 2198 2199Strain fitness (log2 ratio) -2 -1 0 1at 2197.930 kb on - strandat 2197.930 kb on - strandat 2197.930 kb on - strandat 2197.958 kb on - strand, within MPMX26_02140at 2197.960 kb on - strand, within MPMX26_02140at 2198.143 kb on - strand, within MPMX26_02140at 2198.143 kb on - strand, within MPMX26_02140at 2198.143 kb on - strand, within MPMX26_02140at 2198.143 kb on - strand, within MPMX26_02140at 2198.200 kb on - strand, within MPMX26_02140at 2198.200 kb on - strand, within MPMX26_02140at 2198.200 kb on - strand, within MPMX26_02140at 2198.269 kb on - strand, within MPMX26_02140at 2198.311 kb on - strand, within MPMX26_02140at 2198.316 kb on - strand, within MPMX26_02140at 2198.394 kb on - strand, within MPMX26_02140at 2198.672 kb on - strand, within MPMX26_02140at 2199.013 kb on - strand, within MPMX26_02141at 2199.028 kb on - strand, within MPMX26_02141at 2199.028 kb on - strand, within MPMX26_02141at 2199.028 kb on - strand, within MPMX26_02141at 2199.028 kb on - strand, within MPMX26_02141at 2199.060 kb on - strand, within MPMX26_02141at 2199.074 kb on - strand, within MPMX26_02141at 2199.079 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.123 kb on - strand, within MPMX26_02141at 2199.187 kb on - strand, within MPMX26_02141at 2199.187 kb on - strand, within MPMX26_02141at 2199.187 kb on - strand, within MPMX26_02141at 2199.187 kb on - strand, within MPMX26_02141at 2199.292 kb on - strand, within MPMX26_02141at 2199.324 kb on - strand, within MPMX26_02141at 2199.324 kb on - strand, within MPMX26_02141at 2199.343 kb on - strand, within MPMX26_02141at 2199.343 kb on - strand, within MPMX26_02141at 2199.343 kb on - strand, within MPMX26_02141at 2199.343 kb on - strand, within MPMX26_02141at 2199.343 kb on - strand, within MPMX26_02141at 2199.343 kb on - strand, within MPMX26_02141at 2199.343 kb on - strand, within MPMX26_02141at 2199.344 kb on - strand, within MPMX26_02141at 2199.358 kb on - strand, within MPMX26_02141at 2199.386 kb on - strand, within MPMX26_02141at 2199.400 kb on - strand, within MPMX26_02141at 2199.577 kb on + strandat 2199.712 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
2,197,930 - +0.9
2,197,930 - +0.9
2,197,930 - -0.1
2,197,958 - MPMX26_02140 0.12 +0.6
2,197,960 - MPMX26_02140 0.12 -1.0
2,198,143 - MPMX26_02140 0.31 -1.8
2,198,143 - MPMX26_02140 0.31 +0.1
2,198,143 - MPMX26_02140 0.31 +0.1
2,198,143 - MPMX26_02140 0.31 -1.1
2,198,200 - MPMX26_02140 0.37 -0.3
2,198,200 - MPMX26_02140 0.37 +1.7
2,198,200 - MPMX26_02140 0.37 -0.6
2,198,269 - MPMX26_02140 0.45 +0.2
2,198,311 - MPMX26_02140 0.49 -0.4
2,198,316 - MPMX26_02140 0.50 +0.1
2,198,394 - MPMX26_02140 0.58 -0.3
2,198,672 - MPMX26_02140 0.88 -0.1
2,199,013 - MPMX26_02141 0.16 -0.7
2,199,028 - MPMX26_02141 0.19 -0.6
2,199,028 - MPMX26_02141 0.19 +0.0
2,199,028 - MPMX26_02141 0.19 +0.0
2,199,028 - MPMX26_02141 0.19 +0.6
2,199,060 - MPMX26_02141 0.24 +0.3
2,199,074 - MPMX26_02141 0.27 +0.4
2,199,079 - MPMX26_02141 0.28 -0.0
2,199,123 - MPMX26_02141 0.35 -0.1
2,199,123 - MPMX26_02141 0.35 +0.5
2,199,123 - MPMX26_02141 0.35 +0.5
2,199,123 - MPMX26_02141 0.35 +0.2
2,199,123 - MPMX26_02141 0.35 -0.2
2,199,123 - MPMX26_02141 0.35 -0.2
2,199,123 - MPMX26_02141 0.35 +0.2
2,199,123 - MPMX26_02141 0.35 -0.1
2,199,123 - MPMX26_02141 0.35 +0.5
2,199,123 - MPMX26_02141 0.35 -0.2
2,199,123 - MPMX26_02141 0.35 +0.9
2,199,123 - MPMX26_02141 0.35 +0.1
2,199,123 - MPMX26_02141 0.35 +0.1
2,199,123 - MPMX26_02141 0.35 +0.9
2,199,123 - MPMX26_02141 0.35 +0.0
2,199,123 - MPMX26_02141 0.35 -0.2
2,199,187 - MPMX26_02141 0.46 +0.2
2,199,187 - MPMX26_02141 0.46 +0.5
2,199,187 - MPMX26_02141 0.46 +0.6
2,199,187 - MPMX26_02141 0.46 +0.5
2,199,292 - MPMX26_02141 0.64 -0.6
2,199,324 - MPMX26_02141 0.70 +0.4
2,199,324 - MPMX26_02141 0.70 +0.1
2,199,343 - MPMX26_02141 0.73 -2.1
2,199,343 - MPMX26_02141 0.73 +0.1
2,199,343 - MPMX26_02141 0.73 -0.5
2,199,343 - MPMX26_02141 0.73 +1.2
2,199,343 - MPMX26_02141 0.73 -0.1
2,199,343 - MPMX26_02141 0.73 +0.5
2,199,343 - MPMX26_02141 0.73 +0.3
2,199,344 - MPMX26_02141 0.73 +1.1
2,199,358 - MPMX26_02141 0.75 -0.3
2,199,386 - MPMX26_02141 0.80 -0.4
2,199,400 - MPMX26_02141 0.83 +0.3
2,199,577 + -0.5
2,199,712 - -0.3

Or see this region's nucleotide sequence