Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01876

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01875 and MPMX26_01876 are separated by 19 nucleotidesMPMX26_01876 and MPMX26_01877 overlap by 8 nucleotidesMPMX26_01877 and MPMX26_01878 are separated by 109 nucleotides MPMX26_01875: MPMX26_01875 - DNA polymerase III subunit alpha, at 1,914,438 to 1,918,004 _01875 MPMX26_01876: MPMX26_01876 - tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ, at 1,918,024 to 1,918,866 _01876 MPMX26_01877: MPMX26_01877 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, at 1,918,859 to 1,919,677 _01877 MPMX26_01878: MPMX26_01878 - hypothetical protein, at 1,919,787 to 1,920,761 _01878 Position (kb) 1918 1919Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1917.881 kb on + strandat 1917.881 kb on + strandat 1917.891 kb on + strandat 1917.899 kb on + strandat 1917.920 kb on + strandat 1917.920 kb on + strandat 1917.945 kb on + strandat 1917.946 kb on + strandat 1917.964 kb on + strandat 1918.057 kb on + strandat 1918.086 kb on + strandat 1918.088 kb on + strandat 1918.091 kb on + strandat 1918.105 kb on + strandat 1918.111 kb on + strand, within MPMX26_01876at 1918.117 kb on + strand, within MPMX26_01876at 1918.136 kb on + strand, within MPMX26_01876at 1918.183 kb on + strand, within MPMX26_01876at 1918.203 kb on + strand, within MPMX26_01876at 1918.203 kb on + strand, within MPMX26_01876at 1918.208 kb on + strand, within MPMX26_01876at 1918.223 kb on + strand, within MPMX26_01876at 1918.233 kb on + strand, within MPMX26_01876at 1918.233 kb on + strand, within MPMX26_01876at 1918.233 kb on + strand, within MPMX26_01876at 1918.250 kb on + strand, within MPMX26_01876at 1918.264 kb on + strand, within MPMX26_01876at 1918.264 kb on + strand, within MPMX26_01876at 1918.302 kb on + strand, within MPMX26_01876at 1918.324 kb on + strand, within MPMX26_01876at 1918.324 kb on + strand, within MPMX26_01876at 1918.324 kb on + strand, within MPMX26_01876at 1918.345 kb on + strand, within MPMX26_01876at 1918.345 kb on + strand, within MPMX26_01876at 1918.352 kb on + strand, within MPMX26_01876at 1918.396 kb on + strand, within MPMX26_01876at 1918.396 kb on + strand, within MPMX26_01876at 1918.396 kb on + strand, within MPMX26_01876at 1918.396 kb on + strand, within MPMX26_01876at 1918.396 kb on + strand, within MPMX26_01876at 1918.396 kb on + strand, within MPMX26_01876at 1918.396 kb on + strand, within MPMX26_01876at 1918.412 kb on + strand, within MPMX26_01876at 1918.412 kb on + strand, within MPMX26_01876at 1918.417 kb on + strand, within MPMX26_01876at 1918.422 kb on + strand, within MPMX26_01876at 1918.433 kb on + strand, within MPMX26_01876at 1918.462 kb on + strand, within MPMX26_01876at 1918.467 kb on + strand, within MPMX26_01876at 1918.467 kb on + strand, within MPMX26_01876at 1918.488 kb on + strand, within MPMX26_01876at 1918.493 kb on + strand, within MPMX26_01876at 1918.530 kb on + strand, within MPMX26_01876at 1918.535 kb on + strand, within MPMX26_01876at 1918.535 kb on + strand, within MPMX26_01876at 1918.541 kb on + strand, within MPMX26_01876at 1918.549 kb on + strand, within MPMX26_01876at 1918.551 kb on + strand, within MPMX26_01876at 1918.551 kb on + strand, within MPMX26_01876at 1918.599 kb on + strand, within MPMX26_01876at 1918.599 kb on + strand, within MPMX26_01876at 1918.599 kb on + strand, within MPMX26_01876at 1918.599 kb on + strand, within MPMX26_01876at 1918.603 kb on + strand, within MPMX26_01876at 1918.608 kb on + strand, within MPMX26_01876at 1918.613 kb on + strand, within MPMX26_01876at 1918.613 kb on + strand, within MPMX26_01876at 1918.613 kb on + strand, within MPMX26_01876at 1918.626 kb on + strand, within MPMX26_01876at 1918.650 kb on + strand, within MPMX26_01876at 1918.650 kb on + strand, within MPMX26_01876at 1918.650 kb on + strand, within MPMX26_01876at 1918.650 kb on + strand, within MPMX26_01876at 1918.650 kb on + strand, within MPMX26_01876at 1918.713 kb on + strand, within MPMX26_01876at 1918.713 kb on + strand, within MPMX26_01876at 1918.745 kb on + strand, within MPMX26_01876at 1918.753 kb on + strand, within MPMX26_01876at 1918.800 kb on + strandat 1918.807 kb on + strandat 1918.807 kb on + strandat 1918.812 kb on + strandat 1919.383 kb on + strand, within MPMX26_01877at 1919.383 kb on + strand, within MPMX26_01877at 1919.451 kb on + strand, within MPMX26_01877at 1919.487 kb on + strand, within MPMX26_01877at 1919.564 kb on + strand, within MPMX26_01877at 1919.651 kb on + strandat 1919.651 kb on + strandat 1919.651 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.804 kb on + strandat 1919.812 kb on - strandat 1919.820 kb on + strandat 1919.840 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
1,917,881 + +0.2
1,917,881 + +0.9
1,917,891 + +0.4
1,917,899 + +0.1
1,917,920 + +0.4
1,917,920 + +0.5
1,917,945 + +0.5
1,917,946 + +0.3
1,917,964 + -0.4
1,918,057 + +0.5
1,918,086 + -0.1
1,918,088 + -0.1
1,918,091 + +0.6
1,918,105 + -0.6
1,918,111 + MPMX26_01876 0.10 +0.7
1,918,117 + MPMX26_01876 0.11 -0.1
1,918,136 + MPMX26_01876 0.13 -0.5
1,918,183 + MPMX26_01876 0.19 +0.4
1,918,203 + MPMX26_01876 0.21 +0.3
1,918,203 + MPMX26_01876 0.21 -0.3
1,918,208 + MPMX26_01876 0.22 +0.3
1,918,223 + MPMX26_01876 0.24 +0.5
1,918,233 + MPMX26_01876 0.25 -1.0
1,918,233 + MPMX26_01876 0.25 -0.0
1,918,233 + MPMX26_01876 0.25 +0.3
1,918,250 + MPMX26_01876 0.27 +0.3
1,918,264 + MPMX26_01876 0.28 +0.5
1,918,264 + MPMX26_01876 0.28 +0.4
1,918,302 + MPMX26_01876 0.33 +0.0
1,918,324 + MPMX26_01876 0.36 +0.0
1,918,324 + MPMX26_01876 0.36 +0.6
1,918,324 + MPMX26_01876 0.36 -0.2
1,918,345 + MPMX26_01876 0.38 +0.1
1,918,345 + MPMX26_01876 0.38 -0.7
1,918,352 + MPMX26_01876 0.39 +0.8
1,918,396 + MPMX26_01876 0.44 +0.4
1,918,396 + MPMX26_01876 0.44 -0.4
1,918,396 + MPMX26_01876 0.44 +0.4
1,918,396 + MPMX26_01876 0.44 -0.1
1,918,396 + MPMX26_01876 0.44 +0.2
1,918,396 + MPMX26_01876 0.44 +0.0
1,918,396 + MPMX26_01876 0.44 +0.2
1,918,412 + MPMX26_01876 0.46 +0.1
1,918,412 + MPMX26_01876 0.46 +0.5
1,918,417 + MPMX26_01876 0.47 +0.0
1,918,422 + MPMX26_01876 0.47 -0.7
1,918,433 + MPMX26_01876 0.49 -0.0
1,918,462 + MPMX26_01876 0.52 +0.3
1,918,467 + MPMX26_01876 0.53 +0.5
1,918,467 + MPMX26_01876 0.53 -0.4
1,918,488 + MPMX26_01876 0.55 +0.2
1,918,493 + MPMX26_01876 0.56 -0.4
1,918,530 + MPMX26_01876 0.60 -0.1
1,918,535 + MPMX26_01876 0.61 +0.6
1,918,535 + MPMX26_01876 0.61 +0.4
1,918,541 + MPMX26_01876 0.61 +0.1
1,918,549 + MPMX26_01876 0.62 +0.2
1,918,551 + MPMX26_01876 0.63 -0.6
1,918,551 + MPMX26_01876 0.63 -0.0
1,918,599 + MPMX26_01876 0.68 -0.2
1,918,599 + MPMX26_01876 0.68 +0.4
1,918,599 + MPMX26_01876 0.68 -0.1
1,918,599 + MPMX26_01876 0.68 +0.1
1,918,603 + MPMX26_01876 0.69 -0.1
1,918,608 + MPMX26_01876 0.69 +0.1
1,918,613 + MPMX26_01876 0.70 +0.3
1,918,613 + MPMX26_01876 0.70 +0.8
1,918,613 + MPMX26_01876 0.70 -0.2
1,918,626 + MPMX26_01876 0.71 +0.1
1,918,650 + MPMX26_01876 0.74 +1.3
1,918,650 + MPMX26_01876 0.74 +0.6
1,918,650 + MPMX26_01876 0.74 +0.3
1,918,650 + MPMX26_01876 0.74 +0.2
1,918,650 + MPMX26_01876 0.74 -0.6
1,918,713 + MPMX26_01876 0.82 +0.3
1,918,713 + MPMX26_01876 0.82 -0.3
1,918,745 + MPMX26_01876 0.86 +0.3
1,918,753 + MPMX26_01876 0.86 +0.5
1,918,800 + -0.2
1,918,807 + -0.0
1,918,807 + +0.2
1,918,812 + +0.3
1,919,383 + MPMX26_01877 0.64 -3.1
1,919,383 + MPMX26_01877 0.64 -4.5
1,919,451 + MPMX26_01877 0.72 -1.8
1,919,487 + MPMX26_01877 0.77 -2.8
1,919,564 + MPMX26_01877 0.86 -0.5
1,919,651 + -2.7
1,919,651 + -1.9
1,919,651 + -2.1
1,919,799 + +0.2
1,919,799 + -1.1
1,919,799 + -0.3
1,919,799 + -0.9
1,919,799 + +0.2
1,919,804 + -0.4
1,919,812 - -0.3
1,919,820 + +0.1
1,919,840 + +0.1

Or see this region's nucleotide sequence